The use of polycyclic aromatic hydrocarbons as a particulate tracer in the water column of Gaoping (Kaoping) Submarine Canyon

Time-series samples of settling particles were collected in the water column of Gaoping (formerly spelled Kaoping) Submarine Canyon (KPSC) with two sediment traps on taut-line moorings deployed at two different depths (60 and 280 m) between May 26 and June 27, 2004. Average total polycyclic aromatic hydrocarbon (PAH) concentrations of upper and lower trap array samples were 310 ± 61 ng g^− 1 dw (range: 200–440) and 240 ± 36 ng g^− 1 dw (range: 180–290), respectively. Principal component analysis results suggest that PAH sources in the trap-collected particles included diesel vehicle/coal burning, diagenetic sources, and petroleum release. PAH downward fluxes based on settling particles were estimated to be 12–44 μg m^− 2 d^− 1. These values are higher than those reported in the literature for most coastal areas. During the sampling period, both traps were significantly tilted by tidal current and fluctuated vertically. The upper traps experienced greater vertical movements, thus their particle characteristics (e.g., POC, particle mass, and fine particle fraction) varied more than those of the lower traps. Hourly depth variations of the tilted sediment trap array were echoed by the corresponding total PAH concentrations. Moreover, the PAH composition of the collected particles was related to the flow direction and speed. These observations suggest that PAHs can be used as an effective chemical tracer for the transport of terrestrial and marine particulates in a complex aquatic environment like Gaoping (Kaoping) Submarine Canyon.     

Tectonically active sediment dispersal system in SW Taiwan margin with emphasis on the Gaoping (Kaoping) Submarine Canyon

The sediment dispersal system in southwestern Taiwan margin consists of two main parts: the subaerial drainage basin and the offshore receiving marine basin. In plan view, this sediment dispersal system can be further divided into five geomorphic units: (1) the Gaoping (formerly spelled Kaoping) River drainage basin, (2) the Gaoping (Kaoping) Shelf, (3) the Gaoping (Kaoping) Slope, (4) the Gaoping (Kaoping) Submarine Canyon and (5) the Manila Trench in the northernmost South China Sea. The Gaoping River drainage basin is a small (3250 km²), tectonically active and overfilled foreland basin, receiving sediments derived from the uprising Central Range of Taiwan with a maximum elevation of 3952 m. The Gaoping Submarine Canyon begins at the mouth of the Gaoping River, crosses the narrow Gaoping Shelf (~ 10 km) and the Gaoping Slope, and finally merges into the northern termination of the Manila Trench over a distance of ~ 260 km. The SW Taiwan margin dispersal system is characterized by a direct river-canyon connection with a narrow shelf and frequent episodic sediment discharge events in the canyon head.In a regional source to sink scheme, the Gaoping River drainage basin is the primary source area, the Gaoping Shelf being the sediment bypass zone and the Gaoping Slope being the temporary sink and the Manila Trench being the ultimate sink of the sediment from the Taiwan orogen. It is inferred from seismic data that the outer shelf and upper slope region can be considered as a line source for mass wasting deposits delivered to the lower Gaoping Slope where small depressions between diapiric ridges are partially filled with sediment or are empty.At present, recurrent hyperpycnal flows during the flood seasons are temporarily depositing sediments mainly derived from the Gaoping River in the head of the Gaoping Submarine Canyon. On the decadal and century timescales, sediments temporarily stored in the upper reach are removed over longer timescales probably by downslope-eroding sediment flows within the canyon. Presently, the Gaoping Submarine Canyon serves as the major conduit for transporting terrestrial sediment from the Taiwan orogen to the marine sink of the Manila Trench. Seismic data indicate that the Gaoping Submarine Canyon has been eroding the Gaoping Slope intensely by presumed hyperpycnal flows and transporting sediments from the canyon head to the middle and lower reaches of the canyon. The middle reach is a sediment bypass zone whereas the lower reach serves as either a temporary sediment sink or a sediment conduit, depending on relative prevalence to deposition or erosion during canyon evolution. Contrast differences in channel gradient and travel length between the Gaoping and Amazon sediment dispersal systems suggest that the Gaoping (Kaoping) River-Canyon system is an active sediment dispersal system for transporting terrestrial materials to the deep sea. The fate of the Gaoping River sediment is the northern Manila Trench.     

Internal tidal currents in the Gaoping (Kaoping) Submarine Canyon

Data from five separate field experiments during 2000–2006 were used to study the internal tidal flow patterns in the Gaoping (formerly spelled Kaoping) Submarine Canyon. The internal tides are large with maximum interface displacements of about 200 m and maximum velocities of over 100cm/s. They are characterized by a first-mode velocity and density structure with zero crossing at about 100 m depth. In the lower layer, the currents increase with increasing depth. The density interface and the along-channel velocity are approximately 90° out-of-phase, suggesting a predominant standing wave pattern. However, partial reflection is indicated as there is a consistent phase advance between sea level and density interface along the canyon axis.     

Modern accumulation rates and a budget of sediment off the Gaoping (Kaoping) River, SW Taiwan: A tidal and flood dominated depositional environment around a submarine canyon

Ninety-two box cores collected during 2004–2006 from an area of ~ 3000 km² off the Gaoping (formerly spelled Kaoping) River, SW Taiwan, were analyzed for fallout radionuclides (²¹⁰Pb, ¹³⁷Cs and ⁷Be) to elucidate sedimentation rates and processes, and for the calculation of a sediment budget. The study area is located at an active collision margin with a narrow shelf and a submarine canyon extending essentially into the river's mouth. The results indicate fairly constant hemipelagic sedimentation in much of the open margin and for most of the time except in the inner shelf and along the axis of the canyon where sediment transport is more dynamic and is controlled by tidal current and wave activities constantly, and by fluvial floods or gravity-driven flows episodically. Sedimentation rates in the study area derived from ²¹⁰Pb and constrained by ¹³⁷Cs vary from 0.04 to 1.5 cm/yr, with the highest rates (> 1 cm/yr) flanking the Gaoping canyon over the upper slope (200–600 m) and the lowest rates (< 0.1 cm/yr) in the distal basin beyond the continental slope. The depocenter delineated from ²¹⁰Pb-based sedimentation rates overlaps with the area covered by a flood layer resulting from super-typhoon Haitang in July 2005. Such correspondence supports the notion that the processes operating on event timescale have bearing on the formation of the sediment strata over centennial or longer timescales.From the distribution of sedimentation rates, sediment deposited in the study area annually is estimated to be 6.6 Mton/yr, accounting for less than 20% of Gaoping River's sediment load. The calculated budget, coupled with the presence of the short-lived ⁷Be and non-steady-state distribution of low levels of ²¹⁰Pb in sediments along the canyon floor, suggests rapid transport of sediment from Gaoping River's mountainous watershed (the source) via the Gaoping (Kaoping) Submarine Canyon and adjacent channels (as the conduit and temporary sink) to the abyssal plain and the Manila Trench in the South China Sea (the ultimate sink).     

Geochemical controls on distributions and speciation of As and Hg in sediments along the Gaoping (Kaoping) Estuary–Canyon system off southwestern Taiwan

Surface and box-cored sediments were collected along the Gaoping (formerly spelled Kaoping) Estuary–Canyon system and analyzed for As and Hg contents and speciation, ²¹⁰Pb-based sedimentation rates and various geochemical parameters to elucidate the mechanisms that control natural and anthropogenic inputs of As and Hg from the Gaoping (Kaoping) River (KPR). The contents of As and Hg in surface sediments ranged from 1.84 to 20.7 mg kg^− 1 and from 0.07 to 2.15 mg kg^− 1, respectively, in the estuary and canyon. The concentrations generally decreased from the lower river toward the mixing boundary and then increased toward the estuarine mouth, followed by a slight variation in the canyon. Both As and Hg concentrations correlated strongly with clay, total organic carbon (TOC), Al, Fe and Mn contents in estuarine sediments but not necessary the same cases for canyon surface sediments. The factor analysis of surface sediments shows that the first two factors, which account for 75.6% of the variance, may represent major roles of carriers (clay, Al and Fe–Mn oxides) and TOC in controlling As and Hg distributions, respectively. Accordingly, the spatial patterns of the enrichments of As (1.9–16.2) and Hg (1.8–30.8) with reference to the crust levels follow the individual element's distribution patterns, likely because of deposition variability following inputs from the river. The contents of mobile As and Hg correlated substantially with the contents of both metals that were extracted with 0.1 M HCl. In addition to the major pool in the residual fraction (65–87%), As was relatively abundant in Fe–Mn oxides/hydroxides, whereas Hg was abundant in the organic/sulfide fraction. The deposition and accumulation rates of As and Hg in the canyon clearly decreased as the depth of water increased. The depth distributions of both metals are likely controlled primarily by TOC and Fe–Mn oxides associated factors followed by a contribution from anthropogenic pollution. The metal pollution appears to have increased substantially around 1970, following the economic boom in Taiwan, suggesting that modern sediments in the Gaoping (Kaoping) Canyon were derived from the Gaoping (Kaoping) River (KPR).     

The structure of dissipation in the western Irish Sea front

We report on an intensive campaign in the summer of 2006 to observe turbulent energy dissipation in the vicinity of a tidal mixing front which separates well mixed and seasonally stratified regimes in the western Irish Sea. The rate of turbulent dissipation ε was observed on a section across the front by a combination of vertical profiles with the FLY dissipation profiler and horizontal profiles by shear sensors mounted on an AUV (Autosub). Mean flow conditions and stratification were obtained from a bed mounted ADCP and a vertical chain of thermistors on a mooring. During an Autosub mission of 60 h, the vehicle, moving at a speed of ~ 1.2 m s^− 1, completed 10 useable frontal crossings between end points which were allowed to move with the mean flow. The results were combined with parallel measurements of the vertical profile of ε which were made using FLY for periods of up to 13 h at positions along the Autosub track. The two data sets, which show a satisfactory degree of consistency, were combined to elucidate the space–time variation of dissipation in the frontal zone. Using harmonic analysis, the spatial structure of dissipation was separated from the strong time dependent signal at the M₄ tidal frequency to yield a picture of the cross-frontal distribution of energy dissipation. A complementary picture of the frontal velocity field was obtained from a moored ADCP and estimates of the mean velocity derived from the thermal wind using the observed density distribution. which indicated the presence of a strong (0.2 m s^− 1) jet-like flow in the high gradient region of the front. Under neap tidal conditions, mean dissipation varied across the section by 3 orders of magnitude exceeding 10^− 2 W m^− 3 near the seabed in the mixed regime and decreasing to 10^− 5 W m^− 3. in the strongly stratified interior regime. The spatial pattern of dissipation is consistent in general form with the predictions of models of tidal mixing and does not reflect any strong influence by the frontal jet.     

Turbulence in coastal fronts near the mouths of Block Island and Long Island Sounds

Measurements of turbulence were performed in four frontal locations near the mouths of Block Island Sound (BIS) and Long Island Sound (LIS). These measurements extend from the offshore front associated with BIS and Mid-Atlantic Bight Shelf water, to the onshore fronts near the Montauk Point (MK) headland, and the Connecticut River plume front. The latter feature is closely associated with the major fresh water input to LIS. Turbulent kinetic energy (TKE) dissipation rate, ε, was obtained using shear probes mounted on an autonomous underwater vehicle. Offshore, the BIS estuarine outflow front showed, during spring season and ebb tide, maximum TKE dissipation rate, ε, estimates of order 10^− 5 W/kg, with background values of order 10^− 6 to 10^− 9 W/kg. Edwards et al. [Edwards, C.A., Fake, T.A., and Bogden, P.S., 2004a. Spring–summer frontogenesis at the mouth of Block Island Sound: 1. A numerical investigation into tidal and buoyancy-forced motion. Journal of Geophysical Research 109 (C12021), doi:10.1029/2003JC002132.] model this front as the boundary of a tidally driven, baroclinically adjusted BIS flow around the MK headland eddy. At the entrance to BIS, near MK, two additional fronts are observed, one of which was over sand waves. For the headland site front east of MK, without sand waves, during ebb tide, ε estimates of 10^− 5 to 10^− 6 W/kg were observed. The model shows that this front is at the northern end of an anti-cyclonic headland eddy, and within a region of strong tidal mixing. For the headland site front further northeast over sand waves, maximum ε estimates were of order 10^− 4 W/kg within a background of order 10^− 7–10^− 6 W/kg. From the model, this front is at the northeastern edge of the anti-cyclonic headland eddy and within the tidal mixing zone. For the Connecticut River plume front, a surface trapped plume, during ebb tide, maximum ε estimates of 10^− 5 W/kg were obtained, within a background of 10^− 6 to 10^− 8 W/kg. Of all four fronts, the river plume front has the largest finescale mean-square shear, S² ~ 0.15 s^− 2. All of the frontal locations had local values of the buoyancy Reynolds number indicating strong isotropic turbulence at the dissipation scales. Local values of the Froude number indicated shear instability in all of the fronts.     

From suspended particles to strata: The fate of terrestrial substances in the Gaoping (Kaoping) submarine canyon

The river–sea system consisting of the Gaoping (new spelling according to the latest government's directive, formerly spelled Kaoping) River (KPR), shelf, and Submarine Canyon (KPRSC) located off southern Taiwan is an ideal natural laboratory to study the source, pathway, transport, and fate of terrestrial substances. In 2004 during the flood season of the KPR, a system-wide comprehensive field experiment was conducted to investigate particle dynamics from a source-to-sink perspective in the KPRSC with the emphasis on the effect of particle size on the transport, settling, and sedimentation along the pathway. This paper reports the findings from (1) two sediment trap moorings each configured with a Technicap PPS 3/3 sediment trap, and an acoustic current meter (Aquadopp); (2) concurrent hydrographic profiling and water sampling was conducted over 8 h next to the sediment trap moorings; and (3) box-coring in the head region of the submarine canyon near the mooring sites. Particle samples from sediment traps were analyzed for mass fluxes, grain-size composition, total organic carbon (TOC) and nitrogen (TN), organic matter (OM), carbonate, biogenic opal, polycyclic aromatic hydrocarbon (PAH), lithogenic silica and aluminum, and foraminiferal abundance. Samples from box cores were analyzed for grain-size distribution, TOC, particulate organic matter (POM), carbonate, biogenic opal, water content, and ²¹⁰Pb_ex. Water samples were filtered through 500, 250, 63, 10 µm sieves and 0.4 µm filter for the suspended sediment concentration of different size-classes.Results show that the river and shelf do not supply all the suspended particles near the canyon floor. The estimated mass flux near the canyon floor exceeds 800 g/m²/day, whose values are 2–7 times higher than those at the upper rim of the canyon. Most of the suspended particles in the canyon are fine-grained (finer than medium silt) lithogenic sediments whose percentages are 90.2% at the upper rim and 93.6% in the deeper part of the canyon.As suspended particles settle through the canyon, their size-composition shows a downward fining trend. The average percentage of clay-to-fine-silt particles (0.4–10 µm) in the water samples increases from 22.7% above the upper rim of the canyon to 56.0% near the bottom of the canyon. Conversely, the average percentage of the sand-sized (> 63 µm) suspended particles decreases downward from 32.0% above the canyon to 12.0% in the deeper part of the canyon. Correspondingly, the substrate of the canyon is composed largely of hemipelagic lithogenic mud. Parallel to this downward fining trend is the downward decrease of concentrations of suspended nonlithogenic substances such as TOC and PAH, despite of their affinity to fine-grained particles.On the surface of the canyon, down-core variables (grain size, ²¹⁰Pb_ex activity, TOC, water content) near the head region of the canyon show post-depositional disturbances such as hyperpycnite and turbiditic deposits. These deposits point to the occurrences of erosion and deposition related to high-density flows such as turbidity currents, which might be an important process in submarine canyon sedimentation.     

Estimation of the surface and mid-depth currents from Argo floats in the Pacific and error analysis

With the large deployment, the Array for Real-time Geostrophic Oceanography program has great potential for measuring the ocean currents both on the surface and at mid-depth. However the positioning error of fixes in a trajectory varies from 150 m to 1000 m, and thus created difficulty for accurate estimations of the surface and mid-depth currents. Also the reliability of the estimated surface and mid-depth currents requires accurate error estimations.In this study a new sequential method of Argo float surface trajectory tracking and extrapolating is proposed based on Kalman Filter (KF), under the presumption that a surface trajectory of Argo float is dominated by a constant current plus inertial oscillation. This trajectory tracking and extrapolating method is able to reduce the positioning uncertainties of Argo surface trajectories and provides error estimations. When this method was applied to extrapolate the positions when float resurfacing and descending, the estimation error of the mid-depth currents can be reduced. Utilizing this method in the Pacific, surface and mid-depth currents were estimated from surface trajectories of Argo floats from 2001 to 2004, along with their detailed error estimations. The average error for surface currents is about 4.4 cm s^− 1 which is equivalent to the accuracy order (5 cm s^− 1) of the Surface Velocity Program drifters. The estimation error of the mid-depth currents at 1000 db is reduced to about 0.21 cm s^− 1 without considering the effect of vertical shear.This study shows that the surface trajectory from Argo float provides a new means to measure surface circulations in the global ocean at real time, and that the estimated mid-depth current could be one of the important sources to improve the understanding for ocean dynamic.     

Production of Acartia omorii (Copepoda: Calanoida) in Ilkwang Bay, southeastern coast of Korea

Production of the marine calanoid copepod Acartia omorii was measured from 2 October 1991 to 8 October 1992 at a station in Ilkwang Bay on the southeastern coast of Korea. A. omorii (nauplii + copepodites + adults) were present in the plankton throughout the year, with seasonal variation in abundance. Biomass of A. omorii was averaged at 0.44 mgC m^− 3, with peaks in February and July, and relatively low biomass in late summer and fall. Egg production rate ranged from 2.4 to 151.9 μgC m^− 3 day^− 1, which was equivalent to 95–6075 eggs m^− 3 day^− 1. Fecundity of an adult female was averaged at 38 eggs female^− 1 day^− 1. Instantaneous growth rates of copepodites were higher than those of nauplii stages. Annual production of A. omorii ranged from 33.5 mgC m^− 3 year^− 1 to 221 mgC m^− 2 year^− 1, showing a seasonal variation of daily production rate with peaks in February and July. The daily production rate of A. omorii was significantly correlated with chlorophyll a concentration. These results suggest that standing stocks and/or productivity of phytoplankton are the major influencing factors, rather than water temperature for the seasonal variation of production of A. omorii in Ilkwang Bay.     

Microbial food web responses to light and nutrients beneath the coastal Arctic Ocean sea ice during the winter–spring transition

We measured the abundance and biomass of phototrophic and heterotrophic microbes in the upper mixed layer of the water column in ice-covered Franklin Bay, Beaufort Sea, Canada, from December 2003 to May 2004, and evaluated the influence of light and nutrients on these communities by way of a shipboard enrichment experiment. Bacterial cell concentrations showed no consistent trends throughout the sampling period, averaging (± SD) 2.4 (0.9) × 10⁸ cells L^− 1; integrated bacterial biomass for the upper mixed layer ranged from 1.33 mg C m^− 3 to 3.60 mg C m^− 3. Small cells numerically dominated the heterotrophic protist community in both winter and spring, but in terms of biomass, protists with a diameter > 10 µm generally dominated the standing stocks. Heterotrophic protist biomass integrated over the upper mixed layer ranged from 1.23 mg C m^− 3 to 6.56 mg C m^− 3. Phytoplankton biomass was low and variable, but persisted during the winter period. The standing stock of pigment-containing protists ranged from a minimum value of 0.38 mg C m^− 3 in winter to a maximal value of 6.09 mg C m^− 3 in spring and the most abundant taxa were Micromonas-like cells. These picoprasinophytes began to increase under the ice in February and their population size was positively correlated with surface irradiance. Despite the continuing presence of sea ice, phytoplankton biomass rose by more than an order of magnitude in the upper mixed layer by May. The shipboard experiment in April showed that this phototrophic increase in the community was not responsive to pulsed nutrient enrichment, with all treatments showing a strong growth response to improved irradiance conditions. Molecular (DGGE) and microscopic analyses indicated that most components of the eukaryotic community responded positively to the light treatment. These results show the persistence of a phototrophic inoculum throughout winter darkness, and the strong seasonal response by arctic microbial food webs to sub-ice irradiance in early spring.     

A dense water outflow from the Ross Sea, Antarctica: Mixing and the contribution of tides

We use hydrographic, current, and microstructure measurements, and tide-forced ocean models, to estimate benthic and interfacial mixing impacting the evolution of a bottom-trapped outflow of dense shelf water from the Drygalski Trough in the northwestern Ross Sea. During summer 2003 an energetic outflow was observed from the outer shelf ( 500 m isobath) to the  1600 m isobath on the continental slope. Outflow thickness was as great as  200 m, and mean speeds were  0.6 m s^− 1 relative to background currents exceeding  1 m s^− 1 that were primarily tidal in origin. No outflow was detected on the slope in winter 2004, although a thin layer of dense shelf water was present on the outer shelf. When the outflow was well-developed, the estimated benthic stress was of order one Pascal and the bulk Froude number over the upper slope exceeded one. Diapycnal scalar diffusivity (K_z) values in the transition region at the top of the outflow, estimated from Thorpe-scale analysis of potential density and measurements of microscale temperature gradient from sensors attached to the CTD rosette, were of order 10^− 3−10^− 2 m² s^− 1. For two cases where the upper outflow boundary was particularly sharply defined, entrainment rate w_e was estimated from K_z and bulk outflow parameters to be  10^− 3 m s^− 1 ( 100 m day^− 1). A tide-forced, three-dimensional primitive equation ocean model with Mellor-Yamada level 2.5 turbulence closure scheme for diapycnal mixing yields results consistent with a significant tidal role in mixing associated with benthic stress and shear within the stratified ocean interior.     

Late summer stratification, internal waves, and turbulence in the Yellow Sea

Microstructure profiling measurements at two locations in the Yellow Sea (a deeper central basin and a local shelf break) were analyzed focusing on tidal and internal-wave induced turbulence near the bottom and in the pycnocline. A classical three-layer density structure consisting of weakly stratified surface and bottom boundary layers and a narrow sharp pycnocline is developed by the end of warm season. Turbulence in the surface layer was not influenced by the tidal forcing but by the diurnal cycle of buoyancy flux and wind forcing at the sea surface. The enhanced dissipation and diffusivity generated by the shear stress at the seafloor was found in the water interior at heights 10–15 m above the bottom with a phase shift of ~ 5–6 m/h. No internal waves, turbulence, or mixing were detected in the pycnocline in the central basin, in contrast to the pycnocline near the local shelf break wherein internal waves of various frequencies were observed all the time. The thickness of the surface layer near the local shelf break slightly exceeded that of the bottom layer (20 vs. 18 m). A 5–6 m high vertical displacement of the pycnocline, which emerged during the low tide, was arguably caused by the passage of an internal soliton of elevation. During this episode, the gradient Richardson number decreased below 0.25 due to enhanced vertical shear, leading to local generation of turbulence with dissipation rates exceeding the background level by an order of magnitude.     

Seasonal study of dissolved CH4, CO2 and N2O in a shallow tidal system of the bay of Cádiz (SW Spain)

During 2004, 10 samplings were performed in order to measure dissolved methane (CH₄), carbon dioxide (CO₂) and nitrous oxide (N₂O) in the surface waters of Río San Pedro, a tidal creek in the salt marsh area of the Bay of Cádiz (SW Spain). The inner partvs of the creek is affected by the inputs coming from an intensive fish farm and the drainage of an extensive salt marsh area.Dissolved CH₄, CO₂ and N₂O concentrations ranged from 11 to 88 nM, 36 to 108 μM and 14 to 50 nM, respectively. Surface waters were in all cases oversaturated with respect to the atmosphere, reaching values of up to 5000% for CH₄, 1240% for CO₂ and 840% for N₂O. Dissolved CH₄, CO₂ and N₂O showed a significant tidal and seasonal variability. Over a tidal cycle, concentrations were always highest during low tide, which points to the influence of the inputs from the fish farm effluent and the drainage of the adjacent salt marsh area, as well as in situ production within the system. Dissolved CH₄, CO₂ and N₂O seasonal patterns were similar and showed maximum concentrations in summer conditions. Using four different parameterizations to calculate the gas transfer coefficients [Liss, P.S. and Merlivat, L., 1986. Air-sea exchange rates: introduction and synthesis. In P. Buat-Ménard (Ed.), The Role of Air-Sea Exchanges in Geochemical Cycling. Reidel, Dordrecht, The Netherlands, p. 113–127.; Clark, J.F., Schlosser, P., Simpson, H.J., Stute, M., Wanninkhof, R., and Ho, D.T., 1995. Relationship between gas transfer velocities and wind speeds in the tidal Hudson River determined by the dual tracer technique. In: B. Jähne and E. Monahan (Eds.), Air-Water Gas Transfer: AEON Verlag and Studio, Hanau, Germany, pp. 785–800.; Carini, S., Weston, N., Hopkinson, G., Tucker, J., Giblin, A. and Vallino, J., 1996. Gas exchanges rates in the Parker River estuary, Massachusetts. Biol. Bull., 191: 333–334.; Kremer, J.N., Reischauer, A. and D'Avanzo, C., 2003. Estuary-specific variation in the air-water gas exchange coefficient for oxygen. Estuaries, 26: 829–836.], the averaged air–water fluxes of CH₄, CO₂ and N₂O from the creek to the atmosphere ranged between 34 and 150 μmol CH₄ m^− 2 day^− 1, 73 and 177 mmol CO₂ m^− 2 day^− 1 and 24 and 62 μmol N₂O m⁻² day⁻¹, respectively.     

Atmospheric CO2 measurements and error analysis on seasonal air–sea CO2 fluxes in the Bay of Biscay

Atmospheric molar fraction of CO₂ (xCO₂^atm) measurements obtained on board of ships of opportunity are used to parameterize the seasonal cycle of atmospheric xCO₂ (xCO₂^atm) in three regions of the eastern North Atlantic (Galician and French offshore and Bay of Biscay). Three selection criteria are established to eliminate spurious values and identify xCO₂^atm data representative of atmospheric background values. The filtered data set is fitted to seasonal curve, consisting of an annual trend plus a seasonal cycle. Although the fitted curves are consistent with the seasonal evolution of xCO₂^atm data series from land meteorological stations, only ship-board measurements can report the presence of winter xCO₂^atm minimum on Bay of Biscay. Weekly air–sea CO₂ flux differences (mmol C·m^− 2 day^− 1) produced by the several options of xCO₂^atm usually used (ship-board measurements, data from land meteorological stations and annually averaged values) were calculated in Bay of Biscay throughout 2003. Flux error using fitted seasonal curve relative to on board measurements was minimal, whereas land stations and annual means yielded random (− 0.2 ± 0.3 mmol C·m^− 2·day^− 1) and systematic (− 0.1 ± 0.4 mmol C·m^− 2 day^− 1), respectively. The effect of different available sources of sea level pressure, wind speed and transfer velocity were also evaluated. Wind speed and transfer velocity parameters are found as the most critical choice in the estimate of CO₂ fluxes reaching a flux uncertainty of 7 mmol C·m^− 2·day^− 1 during springtime. The atmospheric pressure shows a notable relative effect during summertime although its influence is quantitatively slight on annual scale (0.3 ± 0.2 mmol C·m^− 2·day^− 1). All results confirms the role of the Bay of Biscay as CO₂ sink for the 2003 with an annual mean CO₂ flux around − 5 ± 5 mmol C m^− 2 day^− 1.     

Th-derived particulate organic carbon fluxes in the northern Barents Sea with comparison to drifting sediment trap fluxes

Large-volume sampling of ²³⁴Th was conducted to estimate particulate organic carbon (POC) export in conjunction with drifting sediment trap deployments in the northern Barents Sea in July 2003 and May 2005. ²³⁴Th-derived POC fluxes averaged 42.3 ± 39.7 mmol C m^− 2 d^− 1 in 2003 and 47.1 ± 30.6 mmol C m^− 2 d^− 1 in 2005. Sediment trap POC fluxes averaged 13.1 ± 8.2 mmol C m^− 2 d^− 1 in 2003 and 17.3 ± 11.4 mmol C m^− 2 d^− 1 in 2005, but better reflected the transient bloom conditions that were observed at each station within a season. Although ²³⁴Th fluxes agreed within a factor 2 at most stations and depths sampled, sediment trap POC fluxes were lower than large-volume POC flux estimates at almost every station. This may represent an under-collection of POC by the drifting sediment traps or, conversely, an over-collection of POC by the large-volume sampling of ²³⁴Th. It is hypothesized that the offset between the two methods is partly due to the presence of the prymnesiophyte Phaeocystis pouchetii, which potentially causes a large variation in > 53-μm POC/²³⁴Th ratios. Due to the large proportion of dissolved carbon or mucilage released by P. pouchetii, and because it is thought that P. pouchetii does not contribute significantly to the vertical export of biogenic matter in the Barents Sea, the application of large-volume sampling of ²³⁴Th may yield relatively high, and possibly inaccurate POC/²³⁴Th ratios. Hence, POC fluxes derived from ²³⁴Th sampling may be inappropriate and drifting sediment traps might be a more reliable method to measure the vertical export of biogenic matter in regions that have recurrent P. pouchetii blooms, such as the Barents Sea.     

Physical and biological correlates of virus dynamics in the southern Beaufort Sea and Amundsen Gulf

As part of the Canadian Arctic Shelf Exchange Study (CASES), we investigated the spatial and seasonal distributions of viruses in relation to biotic (bacteria, chlorophyll-a (chl a)) and abiotic variables (temperature, salinity and depth). Sampling occurred in the southern Beaufort Sea Shelf in the region of the Amundsen Gulf and Mackenzie Shelf, between November 2003 and August 2004. Bacterial and viral abundances estimated by epifluorescence microscopy (EFM) and flow cytometry (FC) were highly correlated (r² = 0.89 and r² = 0.87, respectively), although estimates by EFM were slightly higher (FC = 1.08 × EFM + 0.12 and FC = 1.07 × EFM + 0.43, respectively). Viral abundances ranged from 0.13 × 10⁶ to 23 × 10⁶ ml^− 1, and in surface waters were ~ 2-fold higher during the spring bloom in May and June and ~ 1.5-fold higher during July and August, relative to winter abundances. These increases were coincident with a ~ 6-fold increase in chl a during spring and a ~ 4-fold increase in bacteria during summer. Surface viral abundances near the Mackenzie River were ~ 2-fold higher than in the Mackenzie Shelf and Amundsen Gulf regions during the peak summer discharge, concomitant with a ~ 5.5-fold increase in chl a (up to 2.4 μg l^− 1) and a ~ 2-fold increase in bacterial abundance (up to 22 × 10⁵ ml^− 1). Using FC, two subgroups of viruses and heterotrophic bacteria were defined. A low SYBR-green fluorescence virus subgroup (V2) representing ~ 71% of the total viral abundance, was linked to the abundance of high nucleic acid fluorescence (HNA) bacteria (a proxy for bacterial activity), which represented 42 to 72% of the bacteria in surface layers. A high SYBR-green fluorescence viral subgroup (V1) was more related to high chl a concentrations that occurred in surface waters during spring and at stations near the Mackenzie River plume during the summer discharge. These results suggest that V1 infect phytoplankton, while most V2 are bacteriophages. On the Beaufort Sea shelf, viral abundance displayed seasonal and spatial variations in conjunction with chl a concentration, bacterial abundance and composition, temperature, salinity and depth. The highly dynamic nature of viral abundance and its correlation with increases in chl a concentration and bacterial abundance implies that viruses are important agents of microbial mortality in Arctic shelf waters.     

Picophytoplankton and nanophytoplankton abundance and distribution in the southeastern Beaufort Sea (Mackenzie Shelf and Amundsen Gulf) during Fall 2002

The distribution of picophytoplankton (0.2–2 µm) and nanophytoplankton (2–20 µm) in the Beaufort Sea–Mackenzie Shelf and Amundsen Gulf regions during autumn, 2002 is examined relative to their ambient water mass properties (salinity, temperature and nutrients: nitrate + nitrite, phosphate, and silicate) and to the ratio of variable to maximum fluorescence, Fv/Fm. Total phytoplankton and cell abundances (< 20 µm) were mainly correlated with salinity. Significant differences in picophytoplankton cell numbers were found among waters near the mouth of the Mackenzie River, ice melt waters and the underlying halocline water masses of Pacific origin. Picophytoplankton was the most abundant phytoplankton fraction during the autumnal season, probably reflecting low nitrate concentrations (surface waters average ~ 0.65 µM). The ratio Fv/Fm averaged 0.44, indicating that cells were still physiologically active, even though their concentrations were low (max Chl a = 0.9 mg m^− 3). No significant differences in Fv/Fm were evident in the different water masses, indicating that rate limiting conditions for photosynthesis and growth were uniform across the whole system, which was in a pre-winter stage, and was probably already experiencing light limitation as a result of shortening day lengths.     

Mortality through ontogeny of soft-bottom marine invertebrates with planktonic larvae

The present survey covers one spawning season of marine benthic invertebrates in a large geographical area, the inner Danish waters, and includes a wide range of habitats with steep salinity and nutrient load gradients. The loss ratios of soft-bottom marine invertebrates from one development stage to the next is calculated based on average abundances of pelagic larvae, benthic post-larvae and adults of Bivalvia, Gastropoda, Polychaeta and Echinodermata, with planktonic development. This gives a rough estimate of the larval and post-larval mortality. Loss ratios between post-larvae stage and adult stage (post-larval mortality) varies from 3:1 to 7:1 (71.2–84.9%) and loss ratios between larvae and post-larvae (larval mortality) and between larvae and adult, ranging from 7:1 to 42:1 (85.2–97.6%) and from 45:1 to 210:1 (97.8–99.5%), respectively. The results show a remarkable unity in loss ratios (mortality) between the mollusc taxa (Bivalvia and Gastropoda) at the phylum/class level. This similarity in loss ratios among the mollusc taxa exhibiting the same developmental pathways suggests that the mortality is governed by the same biotic and abiotic factors. Larval mortality is estimated to range from 0.10 d^− 1 to 0.32 d^− 1 for Bivalvia and ranging from 0.09 d^− 1 to 0.23 d^− 1 for Polychaeta. The species loss ratios combined with specific knowledge of the reproduction cycles give estimated loss ratios (mortality) between the post-larvae and the adult stage of 25:1 and 14:1 for the bivalves Abra spp. and Mysella bidentata. For the polychaete Pygospio elegans the loss ratio (larval mortality) between the larvae and the post-larval stage is 154:1 and between the post-larvae and the adult stage 41:1. For Pholoe inornata the loss ratio between post-larvae and adults is 7:1. The present results confirm that the larval stage, metamorphosis and settlement are the critical phase in terms of mortality in the life cycle for Bivalvia. Assuming steady state based on actual measurements of pelagic larval densities an estimated input to the water column of pelagic bivalve larvae is ranging from 10,930 to 17,157 larvae m^− 2 d^− 1 and for Polychaeta between 2544 and 3994 larvae m^− 2 d^− 1. These estimates seem to correspond to the reproductive capacity of the observed adult densities using life-table values from the literature.The potential settlement of post-larvae is 43 post-larvae m^− 2 d^− 1 for Bivalvia and 56 post-larvae m^− 2 d^− 1 for Polychaeta. The adult turnover time for Bivalvia is estimated to be 1.5 years and 2.1 years for Polychaeta. This exemplifies that species with short generation times may dominate in very dynamic transitional zones with a high frequency of catastrophic events like the frequent incidents of hypoxia in the inner Danish waters.