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一种提高外显子预测的改进周期3消噪策略
引用本文:杜竹青.一种提高外显子预测的改进周期3消噪策略[J].江苏科技大学学报(社会科学版),2013(6):575-579,607.
作者姓名:杜竹青
作者单位:江苏科技大学计算机科学与工程学院,江苏镇江212003
摘    要:为提高外显子的预测精度,文中用到了一种改进的算法-PPA算法( post-processing algorithms ).PPA算法通过比较滤波前后DNA信号N/3处的频谱分量的方法来去除噪声.将PPA算法分别应用到处理离散傅立叶变换(DFT),成对的频谱分析( PSC)和改进的Gabor小波变换( MGWT)的周期3系数来实现周期3的去噪.算法的性能在HMR195,Burset/Gui-go570,Asp673个数据库中进行了评估,并把受体工作特征( ROC)、特异性、灵敏度曲线3个方面作为评测标准.通过实验分析,验证了PPA算法能够有效地提高外显子的预测精度,同时基于小波变换的策略确保了模型的独立性.

关 键 词:PPA算法  基因编码序列(外显子)  功率谱  周期3性

An improved cycle-3 denoising strategy to improve the exon prediction
Du Zhuqing.An improved cycle-3 denoising strategy to improve the exon prediction[J].Journal of Jiangsu University of Science and Technology:Natural Science Edition,2013(6):575-579,607.
Authors:Du Zhuqing
Institution:Du Zhuqing ( School of Computer Science and Engineering, Jiangsu University of Science and Technology, Zhenjiang Jiangsu 212003, China)
Abstract:In order to improve the accuracy of the exon prediction , an improved algorithm -PPA algorithm is used in this paper .PPA compares the N/3 spectral components of DNA signal with the suppressed DNA signal . PPA algorithm were applied to process period -3 coefficients of the discrete Fourier transform ( DFT), Gabor wavelet transform (MGWT) and paired spectrum analysis (PSC) to remove noise.Performance of the algorithm has been evaluated on HMR195, Burset/Guigo570, and Asp67 datasets, and the receptor operating characteris-tic (ROC), specificity, sensitivity curve are used as evaluation standards .Through experimental analysis, we show that the PPA algorithm can effectively improve the prediction accuracy of the exon , and ensure the inde-pendence of the model based on wavelet transform strategy .
Keywords:PPA algorithm  power spectrum
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