Shallow water processes govern system-wide phytoplankton bloom dynamics: A modeling study

A pseudo-two-dimensional numerical model of estuarine phytoplankton growth and consumption, vertical turbulent mixing, and idealized cross-estuary transport was developed and applied to South San Francisco Bay. This estuary has two bathymetrically distinct habitat types (deep channel, shallow shoal) and associated differences in local net rates of phytoplankton growth and consumption, as well as differences in the water column's tendency to stratify. Because many physical and biological time scales relevant to algal population dynamics decrease with decreasing depth, process rates can be especially fast in the shallow water. We used the model to explore the potential significance of hydrodynamic connectivity between a channel and shoal and whether lateral transport can allow physical or biological processes (e.g. stratification, benthic grazing, light attenuation) in one sub-region to control phytoplankton biomass and bloom development in the adjacent sub-region. Model results for South San Francisco Bay suggest that lateral transport from a productive shoal can result in phytoplankton biomass accumulation in an adjacent deep, unproductive channel. The model further suggests that turbidity and benthic grazing in the shoal can control the occurrence of a bloom system-wide; whereas, turbidity, benthic grazing, and vertical density stratification in the channel are likely to only control local bloom occurrence or modify system-wide bloom magnitude. Measurements from a related field program are generally consistent with model-derived conclusions.     

Daily and seasonal variations of the partial pressure of CO2 in surface seawater along Belgian and southern Dutch coastal areas

The variations of the partial pressure of CO₂ (pCO₂) and related parameters were determined in surface seawater along the Belgian coast, from January 1995 to June 1996, at both daily and seasonal time scales. The distribution of pCO₂ in this area is regulated by river input from the Scheldt, biological activity and hydrodynamics. The contribution of each of these processes varies as a function of the considered time scale: (i) the daily variation of pCO₂ depends on the tide although modulated by the biological diel cycle; (ii) the seasonal variation of pCO₂ depends on the input from the Scheldt and the seasonal variations of phytoplanktonic biomass. During winter, the plume of the river Scheldt is oversaturated in pCO₂ with respect to the atmosphere. During spring and summer, phytoplankton blooms occur both in the lower Scheldt estuary and in the river plume and may lead to undersaturation of pCO₂ in the easternmost area of the river plume. However, the degradation of phytoplankton induces oversaturation of pCO₂, in the westernmost area of the plume. Furthermore, the inter-annual variation of pCO₂ depends partly on the fluctuations of the discharge of the Scheldt. Our preliminary results strongly suggest that, on an annual basis, the Scheldt plume behaves as a net source of CO₂ to the atmosphere.     

REVERSAL OF THE DOUBLE－STRANDED－RNA－INDUCED INHIBITION OF PROTEIN SYNTHESIS BY A CATALYTICALLY INACTIVE MUTANT OF THE PROTEIN

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Surface chlorophyll in the Black Sea over 1978–1986 derived from satellite and in situ data

Absolute values of chlorophyll a concentration and its spatial and seasonal variations in the Black Sea were assessed by using satellite CZCS and in situ data. Since the satellite CZCS had operated for the 1978–1986 period, CZCS data was used for assessing the past state of the Black Sea just before the onset of drastic changes observed in late 1980s. The approach used for the calculation of the absolute values of chlorophyll a concentration from CZCS data was based on the direct comparison of in situ chlorophyll a data and those of CZCS and by applying the algorithm developed for the transformation of CZCS data into chlorophyll a values. CZCS Level 2 data related with pigment concentration having a spatial resolution of 1 km at nadir were used. The daily Level 3 files were derived by binning Level 2 values into 4-km grid cells and the monthly and seasonal Level 3 files were created by averaging the daily Level 3 files over the corresponding period. In situ chlorophyll a data were obtained by spectrophotometric and fluorometric methods in 15 scientific cruises over the 1978–1986 period. Total number of ship-measured data used for the comparison with those CZCS values was 590.Chlorophyll a concentration (Chl) was derived from CZCS values (C) with regression equations Chl=kC; the coefficient of transformation k was calculated from six different data sets by taking into account distinctions between subregions and seasons. The reasons for difference in the k values have been analyzed.Statistical comparison of the chlorophyll a values measured in situ and those derived from CZCS data was based on log-transformed data and gave the following results: regression SLOPE=0.842, regression INTERCEPT=−0.081, coefficient of determination (R²)=0.806, root–mean–square ERROR=0.195. The mean monthly chlorophyll a distributions derived from CZCS data over 1978–1986 have been constructed and the mean seasonal chlorophyll a values in different regions have been calculated and analyzed. The significant difference in chlorophyll concentration between the western shelf regions and the open part of the Black Sea has been demonstrated, especially in warm season. At almost all seasons, the highest chlorophyll concentration is observed in the western interior shelf region which is under strong influence of Danube. The summer mean chlorophyll concentration in this region is 18 times higher than that in the open parts and about nine times higher than in the eastern shelf region. The greatest seasonal variations are observed in the open part of the Black Sea: chlorophyll concentration in cold season is four to six times higher than in summer and three to five times higher than in April and October. To the contrary, in the western interior shelf regions, the concentration is higher in May–October (about twice than that in November–March). Seasonal variations in the western outer shelf regions are smoothed out as compared with both the western interior shelf and the open regions.     

Multidisciplinary marine environmental database for the Aral Sea

Special unique database management and processing system (Oceanbase) have been developed to work with the large sets of multivariable interdisciplinary oceanographic and environmental data. AralBase system developed to work with the Aral Sea interdisciplinary data is a variety of the OceanBase. AralBase is a special database application with the expanded functionality designed to explore large multidisciplinary oceanographic and environmental data sets. It provides many possibilities for data loading, selection, access, processing, analysis, preview and export. The AralBase has a customizing user-friendly multi-windows interface. A user can create his/her own desktops and open and arrange as many windows as he/she needs.The most valuable feature of AralBase is the integration of many service tools that allow the user to carry out almost all data processing without any additional software. At the moment, the database is loaded with the oceanographic and meteorological data provided by the participants of the Inco-Copernicus Aral-Kum Project.The OceanBase system and the AralBase, in particular, are the very flexible systems, and they can be used in any environmental and oceanographic project or institution dealing with the water environment (ocean, lakes, rivers) data. The preloaded data bases with the Data Explorer system module can be distributed among the interested scientists and experts to simplify drastically their work with data.     

Circulation features in the Japan/East Sea related to statistically obtained wind patterns in the warm season

A response of the circulation in the Japan/East Sea (JES) to different kinds of wind forcing is studied, with the emphasis on the warm season, using a primitive equation oceanic model. Wind forcing is based on typical patterns obtained from complex empirical orthogonal functions of 1°-gridded NCEP/NCAR 6 h winds for 1998–2005. These patterns are distinguished by a prevailing wind direction. Northwestern wind and strong cyclonic (C) curl prevail in winter, while a variety of patterns occur in the warm season, differing in the wind direction and curl. Three model runs are performed to examine the circulation in response to a prevailing C wind stress curl or an alternating C and anticyclonic (AC) curl or a strong C curl in the warm season. The simulated features are consistent with the observational evidence, in particular with thermal fronts and frequent eddy locations derived from multi-year infrared satellite imagery. The simulated C circulation intensifies and the subarctic region extends southward with the strengthening of a summer C wind stress curl over the JES. Variability of Subarctic Front (SF) in the western JES (between 130°E and 133°E) is strongly affected by summer wind stress curl. Forcing by an AC curl tends to shift SF northward, while SF shifts to the south under the forcing by a C curl, reaching the southern Ulleung Basin in the case of the strong C curl. In the northwestern JES (off Peter the Great Bay, Russia, and North Korea), the SF northwestern branch (NWSF) is simulated. It is a known feature in autumn and early winter and can also occur in the warm season. The simulation results suggest an AC wind stress curl as the forcing of the formation of the NWSF in the warm season. The Siberia Seamount and sharply bending coastline near Peter the Great Bay facilitate partial separation of the Primorye (Liman) Current from the coast. The wind stress curl can be an additional forcing of the Tsushima Warm Current (TWC) branching off the Korea Strait to the East Korea Warm Current (EKWC) and the offshore branch (OB). In the warm season, the simulated TWC bifurcation occurs farther north, the EKWC is strong, and the OB is weak under the forcing of the AC wind stress curl. The EKWC is weak and the OB is strong under the forcing of the strong C wind stress curl.     

REGULATION OF THE INTERFERON－INDUCIBLE PROTEIN KINASEPKR AND2＇5＇ OLIGOADENYLATE SYNTHETASE BY A CATALYTICALLY INACTIVE PKR M

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