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The annual cycle of nanoflagellates (NF) including autotrophic (ANF), heterotrophic (HNF) and mixotropic (MNF) flagellates carried out in a temperate sea (Central Cantabrian Sea, southern Bay of Biscay) is presented. Three stations with characteristics ranging from coastal to oceanic conditions were analysed in order to compare NF response to this gradient. Samples were monthly collected at each station at three different depths between February 2002 and December 2002. CTD profiles were also taken at each station. NF were grouped according to their trophic status into ANF, HNF and MNF. Abundance and biomass were determined for each group. The annual cycle showed a general pattern consisting in a maximum in July with secondary maxima in March and October and minimum values in May. ANF were the most important fraction, making a major contribution (nearly 75%) to total NF biomass in all stations. HNF represented over 20% along the cycle, except for a peak in spring found in every station. MNF reached less than 5%, showing low seasonability. Small flagellates (2–5 µm) dominated throughout the cycle. Microplankton community was also analysed in terms of abundance and biomass. A significant positive correlation (r2 = 0.49) was obtained between 2–5 µm NF and 10–20 µm HNF–MNF biomasses, suggesting a possible trophic relationship between these groups which should be cautiously taken. No significant relationships were found between microplankton and NF or between nutrients and ANF, indicating that the regulation of NF numbers is complex and probably implicates other groups. In addition to this, the unexpected 2002 Chl a concentration pattern and the misplacing of upwelling events render necessary to perform additional studies to fully understand the precise behaviour of NF in the Cantabrian Sea. To the best of our knowledge, this is the first study of a NF cycle in a temperate sea that considers all functional groups.  相似文献   
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