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Asymmetric PCR method in generation of HBV ssDNA for pyrosequencing
Authors:Nian-cai Peng Chun-lin Wang Li-li Zhang Mao-lin Lu Zhen-xi Zhang
Abstract:Objective To explore the optimal primer ratio and concentration of asymmetric polymerase chain reaction (A-PCR) in producing hepatitis B virus (HBV) single-stranded DNA (ssDNA) for pyrosequencing. Methods A-PCR was carried out to generate HBV ssDNA with forward to reverse primers of different ratios (50 : 1, 100 : 1) and concentrations (13. 0 pmol/25μL and 0.14 pmol/25μL, 19. 5 pmol/25μL and 0. 21 pmol/25μL), and the product yield and quality were compared respectively. Results The forward to reverse primer ratio of 50 : 1 provided better yield and concentration of 19. 5 pmol/25μL and 0. 21 pmol//25μL generated a clearer band. Conclusion A simple and feasible method to produce HBV ssDNA for pyrosequencing in batch is established.
Keywords:pyrosequencing  asymmetric polymerase chain reaction (A-PCR)  hepatitis B virus (HBV)  optimization  single-stranded DNA
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