The Gulf Stream, rings and North Atlantic eddy structures from remote sensing (Altimeter and SeaWiFS)

Seasonal SeaWiFS chlorophyll a concentrations cycles and annual changes of altimeter Sea Level Anomaly are derived for the subtropical North Atlantic near  35°N and along a Gulf Stream axis. Spatial structure of SeaWiFS, is defined in terms of deviations from a local seasonal cycle and examined in relation to altimeter eddy structure. In the subtropical region near 35°N, SeaWiFS structure is evident during the spring bloom period with a scale of  430 km, or about twice the eddy scale. A Gulf Stream axis has been selected as a region where the Sea Level Anomaly variance is a maximum. Eddy propagation speeds and scales are examined. Cold-core (cyclonic) rings correspond to areas of high SeaWiFS chlorophyll a. Warm-core (anticyclonic) rings relate to areas of low chlorophyll concentration. Both SeaWiFS structure and eddy structure have a spatial scale of  450 km or twice the ring scale along the Gulf Stream axis. SeaWiFS chlorophyll anomalies and Altimeter Sea Level Anomaly structure have an overall negative correlation coefficient of r = − 0.34. Swirl currents between eddies redistribute surface chlorophyll concentrations and can spatially bias maximum and minimum concentration levels off eddy centre.     

The interaction of tidal advection, diffusion and mussel filtration in a tidal channel

Time series measurements of flow and pigment concentrations (Chl) in the Menai Strait have revealed that the strong residual flow in a tidal channel ( 500 m³ s^− 1) transports phytoplankton from the open sea into the channel where much of it is consumed by suspension feeders, mainly in commercial beds of Mytilus edulis. The progressive depletion of phytoplankton along the channel results in a strong horizontal gradient of plankton and hence Chl. Tidal displacement of this gradient causes large (± 50% of mean) oscillations of Chl in the vicinity of the mussel beds. Vertical mixing by the strong tidal flows is sufficiently vigorous for most of the tidal cycle to ensure that downward diffusion can resupply the near-bed layer although there are indications of some transient depletion around slack water.This paradigm of the interaction of advection, diffusion and filtration determining the distribution of plankton and its supply to mussels has been encapsulated in a series of simple models forced only by boundary values. In the first, a 1-D model of tidal flow in the channel reproduces the principal features of the observed currents including the unusually large spatial change in phase of the currents and the variation of the residual transport with tidal range. The flow field from this physical model is used to drive a second model based on the advection diffusion equation for Chl with a source at the Irish Sea boundary and a sink over the mussel bed. This model illustrates the formation of a strong Chl gradient along the channel and simulates the amplitude and phase of the M₂ oscillations of Chl and the development of the M₄ variation apparent in the observations. This second model has been extended to 2-D over the mussel beds to allow investigation of the effects of water column mixing. The model indicates that only for a short period ( 30 min), close to slack water, is mixing sufficiently reduced to permit the development of a depletion boundary layer and then only within  1 m from the bottom, a result which is consistent with the observations.     

Relationship between phytoplankton bloom and wind stress in the sub-polar frontal area of the Japan/East Sea

The seasonal dynamics of phytoplankton blooms in the central Japan/East Sea (JES) show pronounced year-to-year variability based on Sea-viewing Wide Field-of-view Sensor (SeaWiFS; 19972003) and Moderate Resolution Imaging Spectroradiometer (MODIS)/Terra (20002003) observations. Wind seems to strongly influence this variability. To study the relationship between wind and bloom initiation, we analyzed daily, remotely sensed wind stress data (Active Microwave Instrument–wind [AMI–wind], NASA Scatterometer [NSCAT], and Quick Scatterometer [QuickSCAT]: 19972003) and daily chlorophyll concentrations based on ocean color data (SeaWiFS and MODIS). The results agreed well with the hypotheses; in spring, blooms began 615 days after wind stress weakened. Fall blooms started 39 days after wind strengthened. We also simulated seasonal changes using a simple light–nutrient model using two values for the respiration ratio: 10% and 20%. The use of 20% seemed to reproduce the timing of the spring bloom quite well but underestimated the absolute level of chlorophyll concentration. On the other hand, using 10% produced a better estimation of the chlorophyll concentration but failed to match the timing. Neither of the model runs reproduced the timing of the fall bloom well.     

Observations of the Fawn Trough Current over the Kerguelen Plateau from instrumented elephant seals

Due to its great meridional extent and relatively shallow depths, the Kerguelen Plateau constitutes a major barrier to the eastward flowing Antarctic Circumpolar Current in the Indian sector of the Southern Ocean. While most of the Antarctic Circumpolar Current transport is deflected north of the Kerguelen Islands, the remainder ( 50 Sv, 1 Sv = 10⁶ m³ s^− 1) must pass south of the islands, most probably through the Fawn and Princess Elizabeth Troughs. However, the paucity of finely resolved quasi-synoptic hydrographic data in this remote and infrequently sampled area has limited the progress in our knowledge of the regional circulation. Since 2004, a new approach using elephant seals from the Kerguelen Islands as autonomous oceanographic profilers has provided new information on the hydrography over the Kerguelen Plateau, covering the entire Antarctic Zone between the Polar Front and Antarctica, with a mean along-track resolution of about 25 km. These finely resolved bio-logged data revealed details of a strong northeastward current found across the Fawn Trough (sill depth: 2600 m; 56°S, 78°E). This so-called Fawn Trough Current transports cold Antarctic waters found mostly south of the Elan Bank, between the Ice Limit (58°S) and the Antarctic Divergence (64°S) in the eastern Enderby Basin, toward the Australian–Antarctic Basin. Our analysis also demonstrates that the Deep Western Boundary Current, which carries cold Antarctic water along the eastern flank of the southern Kerguelen Plateau collides with Fawn Trough Current at the outlet of the Fawn Trough sill. In other words, the Fawn Trough constitutes a veritable bottleneck, channelling the quasi-totality of the Antarctic Circumpolar flow found south of the Polar Front. Thanks to the unprecedented fine resolution of seal-borne data, a branch of flow centered at the Winter Water isotherm of 1 °C is also revealed along the northern escarpment of the Elan Bank, and then along the southern edge of Heard Island. Further analysis of different supplementary data reveals a complex circulation pattern in the entire Enderby Basin, with several distinctive branches of flow being strongly controlled by prominent topographic features such as the Southwest Indian Ridge, Conrad Rise, Elan Bank, and Kerguelen Plateau. This newly emerged frontal structure refines considerably previous large-scale circulation schematics of the area.     

A trace metal (Pb, Cd, Zn, Cu) balance for surface waters in the eastern Gotland Basin, Baltic Sea

Trace metal inventories and transboundary fluxes were estimated for the surface waters of the eastern Gotland Basin, and a mass balance for this water body was derived.The study area was delineated by a box which bordered vertically by the sea surface and the halocline and horizontally by the coast of Gotland and the coast of Latvia/Lithuania. For the calculation of the trace metal inventories in the box, a high-resolution sampling was carried out during different seasons. Additional sediment trap studies were performed to calculate the vertical particulate trace metal fluxes through the halocline.The following transboundary fluxes have been estimated: (a) atmospheric input of trace metals; (b) lateral transport from adjacent bodies of surface water; (c) diapycnal fluxes of dissolved trace metals at the halocline; (d) sinking of trace metals, associated with particles, through the halocline, (e) vertical advection through the halocline.The lateral transport into and out of the surface box is important for the metals (Cd, Cu, Zn) with “nutrient-like” behaviour. For particle reactive elements like lead, vertical sedimentation and lateral transport out of the box as much as atmospheric input and lateral input into the box are in the same order of magnitude. Turbulent diapycnal mixing plays a minor role compared to the advective fluxes.The estimated range for the residence times for the region under investigation are  0.5–1.3 years for Pb;  2–11 years for Zn,  7–36 years for Cd and 42–89 years for Cu. This demonstrates that the system reacts very fast for particle reactive elements like Pb, while for copper sedimentation processes are not the preferential sink and can be neglected.     

Dissolved organic matter in shelf waters off the Ría de Vigo (NW Iberian upwelling system)

Net in situ production and export of dissolved organic carbon (DOC) and nitrogen (DON) have been studied in shelf waters off the Ría de Vigo (NW Spain), as part of a comprehensive hydrographic survey carried out from September 1994 to September 1995 with a fortnight periodicity. DOC and DON correlated well (r=+0.78), the slope of the regression line being 12.0±0.7 mol-C mol-N⁻¹, about twice the Redfieldian slope of particulate organic matter, 6.5±0.2 mol-C mol-N⁻¹ (r=+0.95). Labile DOC and DON accumulated in the upper 50 m during the upwelling season (March–September), mainly after prolonged periods of wind relaxation, when horizontal flows were reduced. This labile material represented 50% and 35% of the total (dissolved+particulate) organic carbon and nitrogen susceptible of microbial utilisation, which assert the key contribution of dissolved organic matter (DOM) to the export of new primary production in the NW Iberian upwelling system. This surface excess in shelf waters appeared to be formed into the highly productive Ría de Vigo (a large coastal indentation) at net rates of 4.4 μM-C d⁻¹ and 1.3 μM-C d⁻¹ in the inner and outer segments of the embayment respectively, and subsequently exported to the shelf. Once in the shelf, simple dilution with the inert DOM pool of recently upwelled Eastern North Atlantic Central Water (ENACW) occurred. Eventually, the DOM excess produced during the upwelling season is exported to the adjacent open ocean waters by the coastal circulation. Conversely, during the unproductive downwelling season (October–February), the lowest DOC and DON levels were recorded and export was prevented by the characteristic downwelling front associated to the seasonal poleward slope current.     

Estimation of TKE dissipation rates in dense bottom plumes using a Pulse Coherent Acoustic Doppler Profiler (PC-ADP) — Structure function approach

During a hydrographic survey in January 2006 the spreading of inflowing saline water was observed in the Arkona Basin (Western Baltic Sea). Two bottom mounted ‘pulse coherent’ acoustic Doppler profilers (PC-ADP) were used to measure the near-bottom current field of the dense plume with a high temporal (1 s) and spatial resolution (5 cm). In order to estimate the dissipation rate of turbulent kinetic energy () a structure function approach was applied to the beam velocity data. Simultaneous measurements with a microstructure shear profiler (MSS) and an acoustic Doppler velocimeter (ADV) supplied independent data for the verification of the structure function method. Additional measurements with standard CTD, near-bottom towed and vessel mounted acoustic Doppler current profilers (ADCP) completed the data set.The estimated dissipation rates from the structure function approach fit well with the values derived from the ADV and the MSS probe. It is shown that the structure function approach is a reliable and easily applicable method to derive estimates of TKE dissipation rates from PC-ADP beam velocities. The observed dissipation rates ranged between 5 · 10^− 6 and 1 · 10^− 8 W kg^− 1 depending on the hydrographic conditions. Inside the plume the dissipation rates exceeded that of the overlaying brackish water by two orders of magnitude. Since the noise level of velocity data in pulse coherent mode is considerably lower than in the Doppler mode the PC-ADP can also be used for estimates in marine environments with low turbulence level. Reynolds stresses estimated from the PC-ADP and the ADV agreed well at the same depth level. TKE production derived from PC-ADP measurements compared reasonably well with the dissipation rate of TKE in a varying environment.     

The biogeochemical cycling of methane in Ria de Vigo, NW Spain: Sediment processing and sea–air exchange

Methane (CH₄) concentrations were measured in the water column, in sediment porewaters, and in atmospheric air, in the Ría de Vigo, NW Spain, during both the onset (April 2003) and at the end of (September 2004) seasonal upwelling. In addition, CH₄ concentration and stable isotopic signatures (δ¹³CH₄) were measured in porewaters, and sediment methanogenesis and aerobic oxidation of CH₄ were determined in sediment incubations. Surface water column CH₄ (2 m depth) was in the range 3–180 nmol l^− 1 (110–8500% saturation) and followed a generally landward increase but with localised maxima in both the inner and middle Ría. These maxima were consistent with CH₄ inputs from underlying porewaters in which CH₄ concentrations were up to 3 orders of magnitude higher (maximum 350 μmol l^− 1). Surface water CH₄ concentrations were approximately three times higher in September than in April, consistent with a significant benthic CH₄ flux driven by enhanced sediment methanogenesis following the summer productivity maximum. CH₄ and δ¹³CH₄ in sediment porewaters and in incubated sediment slurries (20 °C) revealed significant sediment CH₄ oxidation, with an apparent isotopic fractionation factor (r_c) of  1.004. Using turbulent diffusion models of air–sea exchange we estimate an annual emission of atmospheric CH₄ from the Ría de Vigo of 18–44 × 10⁶ g (1.1–2.7 × 10⁶ mol). This estimate is approximately 1–2 orders of magnitude lower than a previous estimate based on a bubble transport model.     

Microscale variability in the distributions of large fluorescent particles observed in situ with a planar laser imaging fluorometer

It has been known for decades that particle-size and biomass spectra show regular patterns in the ocean, and that these patterns often show systematic variations with other properties such as total biomass, nutrient concentration, season, and distance (both vertical and horizontal). The recent finding of the ubiquitous nature of layers of phytoplankton < 1 m thick prompted us to explore the fine- and microscale vertical variations of size- and fluorescence-abundance spectra in the ocean. Using a two-dimensional planar laser imaging system mounted on a free-falling platform, we quantified the properties of large fluorescent particles ( 20 μm–2 cm) through the water column, obtaining images every 10–30 cm. These images showed systematic relationships of the spectral properties to total chlorophyll: increased proportions of the smallest particles at high chlorophyll concentrations, and a lengthening of the spectral size range at high total chlorophyll concentrations (more large particles at high chlorophyll concentrations). Further, we observed significant variations of the spectral properties over scales of 1 m and less, and recorded the frequent occurrence of unusual layers of large particles. Our new instrument, which is sensitive to thin layers of enhanced phytoplankton biomass, shows the planktonic community to be highly structured vertically on scales of 1–2 m, particularly within the DCM.     

Assimilation of sea surface temperature in the POL Coastal Ocean Modelling System

A one-dimensional scheme is used to assimilate satellite Sea Surface Temperature data into the Proudman Oceanographic Laboratory Coastal Ocean Modelling System, set up in the Irish Sea with a fine resolution ( 1.8 km). The capabilities of the assimilation scheme are investigated using two different sets of satellite data, of lower and similar resolution to that of the model respectively. Comparison of results with independent data show that assimilation improves the modelled Sea Surface Temperature, but does not address model representation of the temperature vertical structure. It is concluded that for the Irish Sea and at the scales resolved by the model, the assimilation problem cannot be approached in a one-dimensional framework. It is also pointed out that forecast error needs to account explicitly for errors in the representation of the vertical structure of the thermal field.Three-dimensional methods that are suited for coastal systems are then suggested.     

Characteristics of bubble plumes, bubble-plume bubbles and waves from wind-steepened wave breaking

Observations of breaking waves, associated bubble plumes and bubble-plume size distributions were used to explore the coupled evolution of wave-breaking, wave properties and bubble-plume characteristics. Experiments were made in a large, freshwater, wind-wave channel with mechanical wind-steepened waves and a wind speed of 13 m s^− 1. Bubble plumes exhibited a wide range of bubble distributions, physical extent and dynamics. A classification scheme was developed based on plume extent and “optical density” which is the ability of a plume to optically obscure the image of the background until maximum penetration of the plume. Plumes were classified as either dense (obscure) or diffuse (no-obscure). For each class, the plume bubble population size distribution, Φ(r,t), where r is the bubble radius and t the time, was determined. Dense plumes have a large radius peak in Φ and thus are enhanced in large bubbles. Diffuse plumes are well-described by a weakly size decreasing Φ(r,t) for r < 1000 μm and a more strongly size decreasing Φ(r,t) for r > 1000 μm.The bubble-plume formation rate, P, for each class, wave-breaking rate and wave characteristics were measured with respect to fetch. Wave-breaking rate and intensity are strongly fetch-dependent. In general, the trends in P and wave breaking are similar, reaching a maximum at the fetch of maximum wave breaking. The ratio of P for dense to diffuse plumes is even more sensitive to the occurrence of the most intense wave breaking, where dense plume formation is the greatest.Using P and the bubble size population distributions for each plume class, the global bubble-plume, injection size distribution, Ψ_i(r), was calculated. The volume injection rate for the study area was 640 cm³ s^− 1 divided approximately equally between bubbles smaller and larger than r  1700 μm.     

Suspended sediment and erosion dynamics in Kugmallit Bay and Beaufort Sea during ice-free conditions

The Mackenzie River is the largest river on the North American side of the Arctic and its huge freshwater and sediment load impacts the Canadian Beaufort Shelf. Huge quantities of sediment and associated organic carbon are transported in the Mackenzie plume into the interior of the Arctic Ocean mainly during the freshet (May to September). Changing climate scenarios portend increased coastal erosion and resuspension that lead to altered river-shelf-slope particle budgets. We measured sedimentation rates, suspended particulate matter (SPM), particle size and settling rates during ice-free conditions in Kugmallit Bay (3–5 m depth). Additionally, measurements of erosion rate, critical shear stress, particle size distribution and resuspension threshold of bottom sediments were examined at four regionally contrasting sites (33–523 m depth) on the Canadian Beaufort Shelf using a new method for assessing sediment erosion. Wind induced resuspension was evidenced by a strong relationship between SPM and wind speed in Kugmallit Bay. Deployment of sediment traps showed decreasing sedimentation rates at sites along an inshore–offshore transect ranging from 5400 to 3700 g m^− 2 day^− 1. Particle settling rates and size distributions measured using a Perspex settling chamber showed strong relationships between equivalent spherical diameter (ESD) and particle settling rates (r² = 0.91). Mean settling rates were 0.72 cm s^− 1 with corresponding ESD values of 0.9 mm. Undisturbed sediment cores were exposed to shear stress in an attempt to compare differences in sediment stability across the shelf during September to October 2003. Shear was generated by vertically oscillating a perforated disc at controlled frequencies corresponding to calibrated shear velocity using a piston grid erosion device. Critical (Type I) erosion thresholds (u) varied between 1.1 and 1.3 cm s^− 1 with no obvious differences in location. Sediments at the deepest site Amundsen Gulf displayed the highest erosion rates (22–54 g m^− 2 min^− 1) with resuspended particle sizes ranging from 100 to 930 µm for all sites. There was no indication of biotic influence on sediment stability, although our cores did not display a fluff layer of unconsolidated sediment. Concurrent studies in the delta and shelf region suggest the importance of a nepheloid layer which transports suspended particles to the slope. Continuous cycles of resuspension, deposition, and horizontal advection may intensify with reduction of sea ice in this region. Our measurements coupled with studies of circulation and cross-shelf exchange allow parameterization and modeling of particle dynamics and carbon fluxes under various climate change scenarios.     

Air–sea gas exchange at extreme wind speeds measured by autonomous oceanographic floats

Measurements of the air–sea fluxes of N₂ and O₂ were made in winds of 15–57 m s^− 1 beneath Hurricane Frances using two types of air-deployed neutrally buoyant and profiling underwater floats. Two “Lagrangian floats” measured O₂ and total gas tension (GT) in pre-storm and post-storm profiles and in the actively turbulent mixed layer during the storm. A single “EM-APEX float” profiled continuously from 30 to 200 m before, during and after the storm. All floats measured temperature and salinity. N₂ concentrations were computed from GT and O₂ after correcting for instrumental effects. Gas fluxes were computed by three methods. First, a one-dimensional mixed layer budget diagnosed the changes in mixed layer concentrations given the pre-storm profile and a time varying mixed layer depth. This model was calibrated using temperature and salinity data. The difference between the predicted mixed layer concentrations of O₂ and N₂ and those measured was attributed to air–sea gas fluxes F_BO and F_BN. Second, the covariance flux F_CO(z) = wO₂′(z) was computed, where w is the vertical motion of the water-following Lagrangian floats, O₂′ is a high-pass filtered O₂ concentration and (z) is an average over covariance pairs as a function of depth. The profile F_CO(z) was extrapolated to the surface to yield the surface O₂ flux F_CO(0). Third, a deficit of O₂ was found in the upper few meters of the ocean at the height of the storm. A flux F_SO, moving O₂ out of the ocean, was calculated by dividing this deficit by the residence time of the water in this layer, inferred from the Lagrangian floats. The three methods gave generally consistent results. At the highest winds, gas transfer is dominated by bubbles created by surface wave breaking, injected into the ocean by large-scale turbulent eddies and dissolving near 10-m depth. This conclusion is supported by observations of fluxes into the ocean despite its supersaturation; by the molar flux ratio F_BO/F_BN, which is closer to that of air rather than that appropriate for Schmidt number scaling; by O₂ increases at about 10-m depth along the water trajectories accompanied by a reduction in void fraction as measured by conductivity; and from the profile of F_CO(z), which peaks near 10 m instead of at the surface.At the highest winds O₂ and N₂ are injected into the ocean by bubbles dissolving at depth. This, plus entrainment of gas-rich water from below, supersaturates the mixed layer causing gas to flux out of the near-surface ocean. A net influx of gas results from the balance of these two competing processes. At lower speeds, the total gas fluxes, F_BO, F_BN and F_CO(0), are out of the ocean and downgradient.     

Numerical simulation of the barotropic tides in the Tunisian Shelf and the Strait of Sicily

We have investigated the barotropic tides in the Tunisian shelf and the Strait of Sicily using the Regional Ocean Modelling System (ROMS) with very high-resolution. Model performance was evaluated with respect to tide gauge, satellite data, and current meter measurements. The model fields faithfully reproduced the major feature of the barotropic tidal currents and agreed well with existing tidal elevation and phase observations. General features for the various semidiurnal constituents are nearly similar to each other with maximum amplitude in the Gulf of Gabes. The larger tidal currents occur over the continental shelves. In the Adventure Bank, the current is essentially of diurnal type whereas in the Gulf of Gabes it is of semidiurnal type.Tidal energy lost, which is primarily due to bottom stress dissipation, is predominantly in the Gulf of Gabes ( 61%), the Strait of Sicily, and the Strait of Messina. The forcing function for internal tides shows for both M₂ and K₁ constituents, significant spatial variability in the Strait of Sicily. This suggests that some internal tides will be generated in these regions and could thus explain the observed strong diurnal internal waves in the Adventure Bank.     

Circulation, hydrographic and nutrient characteristics of the Cilician Basin, Northeastern Mediterranean Sea

The water mass, circulation and chemical properties of the Cilician Basin, the northeastern Levantine Sea, are described on the basis of three hydrographic cruises performed during May 1997 (spring), July 1998 (summer) and October 2003 (autumn). The hydrographic data reveal the presence of Levantine Surface Water (LSW) and Modified Atlantic Water (MAW) within the upper 90 m layer, Levantine Intermediate Water (LIW) between 90 and 250 m, and Transitional Mediterranean Water (TMW) further below. The temporal variability of the circulation system is manifested by a change in shape, size and intensity of eddies as well as the pathways of the Lattakia Basin coastal current system. The nutrient concentrations varied between nitrate + nitrite = 0.16–0.31 μM, phosphate = 0.02–0.03 μM and silicate = 0.95–1.2 μM for the surface layer during sampling periods. Dissolved nutrient concentrations in the Transitional Mediterranean Water were: 2.1–5.3 μM for NO₃ + NO₂, 0.10–0.21 μM for PO₄ and 5.7–10 μM for Si. The molar ratios of nitrate to phosphate in the water column range between 5 and 20 in the surface layer and reach up to a value of 45 at the top of the nutricline at the depths of 29.05 kg/m³ isopycnal surface for most of the year. Below the nutricline the N / P ratios retain the values around 24–28.     

Summer hypoxia adjacent to the Changjiang Estuary

Changjiang, the third largest runoff in the world, empties into the East China Sea from Shanghai, the fastest developing area of China. With the increasing nutrient load from the river, a severe hypoxia zone was found to about 2  10⁴ km². The mechanism of hypoxia formation adjacent to the Changjiang Estuary receives more and more attention from both scientists and managers. This paper discusses the relationship between hypoxia and the water masses, primary production, particulate material transport and the density stratification in these areas according to data obtained from a cruise in September, 2003. Hypoxia is formed by organic detritus decay. The particulate organisms do not mainly come from the Changjiang river, or from the dead algal deposed locally, but from the local benthic algae or particles advected from the south. Maintenance of hypoxia is due to the large density stratification caused by the significant salinity difference between the fresh plume and salty water from Taiwan Strait. This applies also to other estuaries with large runoff and rapid economic growth drainage, such as the Pearl River. It is suggested that the hypoxic zone here is much more sensitive than that outside Mississippi River. More cruises over different weather and tide conditions are needed to prove this hypothesis. Interdisciplinary research should be further developed in the future.     

Pollution history of a tropical estuary revealed by combined hydrodynamic modelling and sediment geochemistry

Hydrodynamic modelling of water movement in Hunts Bay, a protected part of Kingston Harbour, Jamaica, shows that depth averaged tidal flows are very low. In the northeast corner of Hunts Bay, water is essentially stagnant. Even under high flow conditions, much of the Bay bottom water is ‘bypassed' by buoyant, lower salinity surface flows. The muddy sediments of Hunts Bay reflect these sluggish to stagnant conditions; sediment cores from the northeast corner of the Bay contain progressively higher amounts of organic matter in their upper parts (last 15–20 years sedimentation). Combined C/N ratios and stable carbon isotope compositions of this organic matter imply a sewage origin. Both lead and chromium metal concentrations and enrichment factors relative to average crustal shales show geographically related patterns that reflect hydrodynamic circulation predicted by modelling. In particular, metal concentrations and enrichment factors are highest at the northern end of the bay, especially in the northeast corner. Modelling confirms that stagnant conditions would occur in the northeast part of the bay even without the presence of a major causeway. The causeway may contribute to low flow conditions, but is not the principal cause of organic contamination, which is simply an excessive input of sewage.     

Mixing in the surface boundary layer of a tropical freshwater reservoir

A combined observational-modeling study was conducted to investigate turbulence mixing, and the relation to surface forcing, in the surface boundary layer (SBL) of a tropical, high-altitude, freshwater reservoir. A suite of vertical profiles of temperature microstructure, collected at three different stations of one-day duration each, provided estimates of dissipation rates of turbulence kinetic energy, , and temperature variance, χ. Numerical simulations of and χ, using state-of-the-art, public domain, two-equation turbulence closure models, compared favorably with the observations and reproduced the dynamics of daytime wind mixing as well as the vertical and temporal turbulence structure during nighttime convective conditions.Two independent estimates of vertical eddy diffusivities in the stably stratified (daytime) SBL, computed from the microstructure measurements, agreed closely, and the near surface heat and buoyancy fluxes, computed from the diffusivities, were similar to those computed independently from surface meteorology. Model generated eddy diffusivities agreed closely with the observed values, except those generated by K profile parameterization (KPP) model simulations. The good agreement provides confidence that nutrient fluxes in the SBL may be accurately computed from the models when forced with regularly measured surface meteorological parameters. The consequences are important for estimation of daily primary productivity rates in the euphotic zone and the ability to predict algal blooms such as those observed in the present reservoir.     

Carbonate chemistry dynamics and carbon dioxide fluxes across the atmosphere–ice–water interfaces in the Arctic Ocean: Pacific sector of the Arctic

Climatic changes in the Northern Hemisphere have led to remarkable environmental changes in the Arctic Ocean, which is surrounded by permafrost. These changes include significant shrinking of sea-ice cover in summer, increased time between sea-ice break-up and freeze-up, and Arctic surface water freshening and warming associated with melting sea-ice, thawing permafrost, and increased runoff. These changes are commonly attributed to the greenhouse effect resulting from increased atmospheric carbon dioxide (CO₂) concentration and other non-CO₂ radiatively active gases (methane, nitrous oxide). The greenhouse effect should be most pronounced in the Arctic where the largest air CO₂ concentrations and winter–summer variations in the world for a clean background environment were detected. However, the air–land–shelf interaction in the Arctic has a substantial impact on the composition of the overlying atmosphere; as the permafrost thaws, a significant amount of old terrestrial carbon becomes available for biogeochemical cycling and oxidation to CO₂. The Arctic Ocean's role in determining regional CO₂ balance has been ignored, because of its small size (only  4% of the world ocean area) and because its continuous sea-ice cover is considered to impede gaseous exchange with the atmosphere so efficiently that no global climate models include CO₂ exchange over sea-ice. In this paper we show that: (1) the Arctic shelf seas (the Laptev and East-Siberian seas) may become a strong source of atmospheric CO₂ because of oxidation of bio-available eroded terrestrial carbon and river transport; (2) the Chukchi Sea shelf exhibits the strong uptake of atmospheric CO₂; (3) the sea-ice melt ponds and open brine channels form an important spring/summer air CO₂ sink that also must be included in any Arctic regional CO₂ budget. Both the direction and amount of CO₂ transfer between air and sea during open water season may be different from transfer during freezing and thawing, or during winter when CO₂ accumulates beneath Arctic sea-ice; (4) direct measurements beneath the sea ice gave two initial results. First, a drastic pCO₂ decrease from 410 μatm to 288 μatm, which was recorded in February–March beneath the fast ice near Barrow using the SAMI-CO₂ sensor, may reflect increased photosynthetic activity beneath sea-ice just after polar sunrise. Second, new measurements made in summer 2005 beneath the sea ice in the Central Basin show relatively high values of pCO₂ ranging between 425 μatm and 475 μatm, values, which are larger than the mean atmospheric value in the Arctic in summertime. The sources of those high values are supposed to be: high rates of bacterial respiration, import of the Upper Halocline Water (UHW) from the Chukchi Sea (CS) where values of pCO₂ range between 400 and 600 μatm, a contribution from the Lena river plume, or any combination of these sources.     

Variations of the abundance and nucleic acid content of heterotrophic bacteria in Beaufort Shelf waters during winter and spring

Depth profiles of heterotrophic bacteria abundance were measured weekly over a 6-month period from December to May in Franklin Bay, a 230 m-deep coastal Arctic Ocean site of the southeastern Beaufort Sea. Total bacteria, low nucleic acid (LNA) and high nucleic acid (HNA) bacteria abundances were measured using flow cytometry after SYBR Green I staining. The HNA bacteria abundance in surface waters started to increase 5–6 weeks after phytoplankton growth resumed in spring, increasing from 1 × 10⁵ to 3 × 10⁵ cells mL^− 1 over an 8-week period, with a net growth rate of 0.018 d^− 1. LNA bacteria response was delayed by more than two months relative to the beginning of the phytoplankton biomass accumulation and had a lower net growth rate of 0.013 d^− 1. The marked increase in bacterial abundance occurred before any significant increase in organic matter input from river discharge (as indicated by the unchanged surface water salinity and DOC concentrations), and in the absence of water temperature increase. The abundance of bacteria below the halocline was relatively high until January (up to 5 × 10⁵ cells mL^− 1) but then decreased to values close to 2 × 10⁵ cells mL^− 1. The three-fold bacterial abundance increase observed in surface waters in spring was mostly due to HNA bacteria, supporting the idea that these cells are the most active.