Sediment physical properties of the DYNAS study area

Physical properties of the deposits in the DYNAS study area, the Mecklenburg Bay, were investigated using sediment echosounders and laboratory analysis were carried out on undisturbed short sediment cores. Wet bulk densities of about 1.2 g/cm³ for mud and up to 1.9 g/cm³ for silty sand were found in surface sediments of the Mecklenburg Bay. Sediment density–depth functions were approximated by logarithmic regression functions at different depth intervals. Sediment consolidation was studied by both (i) consolidation tests of sediment samples and (ii) from the void ratio–overburden pressure relation in natural sediments. Low shear strength values of 9–71 Pa were measured at the mud surface. Downcore, a depth gradient of about 14.5 Pa/cm was calculated. Sediments with high silt and sand contents are characterized by shear strength values of up to 3000 Pa. Published formulas derived from erosion studies were used to calculate the critical shear stress using wet bulk density and shear strength. The obtained results demonstrate clearly, that there is still a wide gap in knowledge about the relationships between erosion parameters and sediment physical properties.     

Benthic habitat quality assessment of an oxygen stressed fjord by surface and sediment profile images

In May and October 1994 the benthic habitats in Havstensfjord (26 km²), a seasonally oxygen stressed stratified fjord, were classified by taking sediment surface and sediment profile images (SPI) at 90 stations, randomized into nine strata. Qualitative grab samples for faunal inspection were taken at about of the stations in both May and October to help to identify objects in the images. The images give information on sediment characteristics (texture, oxic/anoxic conditions, lamination) which often can be related to functional properties of the macrofauna (burrows, tubes, feeding voids, reworked sediment) or to observations on benthic epifauna. In combination, such variables mirror the quality of the benthic habitat. Analysis of sediment profile images was done with multivariate methods [Benthic Habitat Quality (BHQ) index] and univariate statistical methods to describe differences between areas and depths. Variance analysis of BHQ indices indicated a significant interaction between area and depth. In both the northeast and northwest strata the oxygen stress had induced a habitat degradation at depths deeper than 25 m compared to shallower northwest and northeast strata and all south depth strata. No significant difference in mean BHQ index was found between May and October. We discuss the potential application of the SPI technique for efficient monitoring oxygen stressed marine coastal areas.     

Impact of macrozoobenthic structures on near-bed sediment fluxes

Sandy sediments in shallow coastal waters of the Baltic Sea are often characterised by large numbers of biogenic structures which are produced by macrozoobenthos species. A series of experiments was devised to quantify how the interaction of such structures with the near-bed flow regime affects the sediment flux. Most experiments were done with simplified replicates of structures generated by typical species commonly found in the Mecklenburg Bight, starting with solitary structures and regularly-spaced arrays in a range of characteristic population densities, followed by a complex benthic macrofauna community, both artificial and alive. A laboratory flume channel, equipped with an acoustic Doppler flow sensor and a topography scanning laser, was used for high-resolution measurements (2 mm horizontal step size and 0.3 mm vertical resolution) of sand erosion (220 µm median grain size, at 20 cm s^− 1) and fine particle deposition (8 µm grain size, at 5 cm s^− 1). Sediment transport threshold values were measured for each layout. As a rule-of-thumb, both the erosion fluxes and the deposition of suspended matter increased considerably at low population densities (below 2%, expressed as percent of the sediment surface covered, i.e. roughness density RD). Above densities of 4%, erosion almost stopped inside the test arrays, and deposition remained well below the level of unpopulated areas. An attempt to extrapolate these findings to field conditions (using field current velocity data from 2001) showed that the net flux switched from erosion to deposition for densities above 5%. These parameters can now be integrated into a numerical sediment transport model coupling waves, currents, sediment dynamics and biological processes, which is currently under construction at the Baltic Sea Research Institute (IOW), Rostock, Germany.     

Sediment community biomass and respiration in the Northeast water polynya, Greenland: a numerical simulation of benthic lander and spade core data

Sediment community metabolism (oxygen demand) was measured in the Northeast Water (NEW) polynya off Greenland employing two methods: in situ benthic chambers deployed with a benthic (GOMEX) lander and shipboard laboratory Batch Micro-Incubation Chambers (BMICs) utilizing ‘cores’ recovered from USNEL box cores. The mean benthic respiration rate measured with the lander was 0.057 mM O₂ m⁻² h⁻¹ (n = 5); whereas the mean measured with the BMICs was 0.11 mM O₂ m⁻² h⁻¹ (n = 21; p < 0.01 that the means were the same). In terms of carbon fluxes (14 and 27 mg C m⁻² d⁻¹), these respiration rates represent ca. 5–15% of the average net primary production measured in the euphotic zone in 1992. The biomass of the bacteria, meiofauna and macrofauna were measured at each location to quantify the relationship between total community respiration and total community biomass (mean 1.42 g C m⁻²). Average carbon residence time in the biota, calculated by dividing the biomass by the respiration, was on the order of 50–100 days, which is comparable to relatively oligotrophic continental margins at temperate latitudes.The biomass and respiration data for the aerobic heterotrophic bacteria, the infaunal invertebrates (meiofauna and macrofauna), and the epifaunal megabenthos (two species of brittle stars) are summarized in a ‘steady-state’ solution of a sediment food chain model, in terms of carbon. This carbon budget illustrates the relative importance of the sediment-dwelling invertebrates in the benthic subsystem, compared to the bacteria and the epibenthos, during the summer open-water period in mud-lined troughs at depths of about 300 m. The input needed to drive heterotrophic respiratory processes was within the range of the input of organic matter recorded in moored, time-sequencing sediment traps.A time-dependent numerical simulation of the model was run to investigate the potential responses of the three size groups of benthos to abrupt seasonal pulses of particulate organic matter. The model suggests that there is a time lag in the increase in bottom community biomass and respiration following the POC pulse, and provides hypothetical estimates for the potential carbon storage in the summer (open water), followed by catabolic losses during each ensuing winter (ice covered).This sequence of storage and respiration may contribute to the process of seasonal CO₂ ‘rectification’ (sensu Yager et al., 1995) in some Arctic ecosystems.     

Relationships between near-bottom dissolved oxygen and sediment profile camera measures

The United States Environmental Protection Agency (U.S. EPA) and other environmental authorities regulate concentrations of dissolved oxygen (DO) as a measure of nutrient-related eutrophication in estuarine and coastal waters. However, in situ DO concentrations are extremely variable, and their characterization requires an extensive sampling program to provide data over meaningful scales of time and space. In contrast, benthic faunal communities integrate the impacts of low DO over time, and can be rapidly assessed using benthic imaging. The goal of this study was to quantify the relationships between near-bottom dissolved oxygen and measures derived from benthic imaging with a sediment profile camera. We monitored three stations in Narragansett Bay (Rhode Island, USA) for DO and other water quality parameters 15–20 cm above the sediment surface on 15-minute intervals between July and November 2002, and regularly sampled these stations with a sediment profile camera throughout this time period. These soft-sediment stations encompassed several DO environments. We tested for relationships between near-bottom DO and several camera measures, including Nilsson and Rosenberg's Benthic Habitat Quality (BHQ) index, the apparent Redox Potential Discontinuity (aRPD) depth, and various faunal features that can be identified in sediment profile images. Camera measures were examined against a variety of methods of characterizing DO (including mean DO, and the percent of time under various DO thresholds), over a span of time scales from 1 day to 49 days. The best relationship (highest r²) between near-bottom DO and BHQ was found when DO was evaluated as the percent of time under a hypoxic threshold of 2.6 mg l^− 1 over a 28-day time scale (by examining DO records over the 28 days preceding each camera deployment). We found that, over several benthic settings, the BHQ index was successful at identifying environments that had experienced relatively high or low DO over the preceding four weeks. Our sediment profile data showed more variability with DO in the intermediate values of BHQ. We conclude that sediment profile camera measures correlate to DO in areas where low DO is the primary stressor, integrate DO over ecologically relevant time scales, and enable sampling over spatial scales that are meaningful for mapping by virtue of rapid deployment and analysis. We submit that sediment profile camera imagery is a useful assessment and mapping tool for environmental managers interested in benthic condition and in first-order quantitative estimates of near-bottom DO regimes in areas where low DO is the primary benthic stressor.     

Modeling Potential Impacts of Beach Replenishment on Horseshoe Crab Nesting Habitat Suitability

Beach replenishment has been proposed to increase nesting habitat for horseshoe crabs, but its environmental consequences may compromise the egg development and viability of this declining species. Horseshoe crab habitat requirements were used to build a habitat suitability model in STELLA to predict the potential impacts of beach replenishment on horseshoe crab eggs. A habitat suitability index (H.S.I.) comprised of six variables (dissolved oxygen, sediment grain size, sand temperature, sand moisture, wave energy, and salinity) was developed and compared between replenished and natural beaches. Sediment grain size and dissolved oxygen were higher in the natural beach, whereas sand temperature and moisture were higher in the replenished beach, resulting in significantly higher suitability of the natural beach (p = 5.39 × 10^?15, df = 30). The model was most sensitive to air temperature, rainfall, tide, and sediment grain size. This model is useful for understanding the processes affecting horseshoe crabs and predicting impacts of coastal management activities on habitat suitability. Based on the results of this model, beach replenishment is not recommended for increasing or improving horseshoe crab habitat, unless care is taken to match fill sediment to natural grain size and color.     

Suspended sediment and erosion dynamics in Kugmallit Bay and Beaufort Sea during ice-free conditions

The Mackenzie River is the largest river on the North American side of the Arctic and its huge freshwater and sediment load impacts the Canadian Beaufort Shelf. Huge quantities of sediment and associated organic carbon are transported in the Mackenzie plume into the interior of the Arctic Ocean mainly during the freshet (May to September). Changing climate scenarios portend increased coastal erosion and resuspension that lead to altered river-shelf-slope particle budgets. We measured sedimentation rates, suspended particulate matter (SPM), particle size and settling rates during ice-free conditions in Kugmallit Bay (3–5 m depth). Additionally, measurements of erosion rate, critical shear stress, particle size distribution and resuspension threshold of bottom sediments were examined at four regionally contrasting sites (33–523 m depth) on the Canadian Beaufort Shelf using a new method for assessing sediment erosion. Wind induced resuspension was evidenced by a strong relationship between SPM and wind speed in Kugmallit Bay. Deployment of sediment traps showed decreasing sedimentation rates at sites along an inshore–offshore transect ranging from 5400 to 3700 g m^− 2 day^− 1. Particle settling rates and size distributions measured using a Perspex settling chamber showed strong relationships between equivalent spherical diameter (ESD) and particle settling rates (r² = 0.91). Mean settling rates were 0.72 cm s^− 1 with corresponding ESD values of 0.9 mm. Undisturbed sediment cores were exposed to shear stress in an attempt to compare differences in sediment stability across the shelf during September to October 2003. Shear was generated by vertically oscillating a perforated disc at controlled frequencies corresponding to calibrated shear velocity using a piston grid erosion device. Critical (Type I) erosion thresholds (u) varied between 1.1 and 1.3 cm s^− 1 with no obvious differences in location. Sediments at the deepest site Amundsen Gulf displayed the highest erosion rates (22–54 g m^− 2 min^− 1) with resuspended particle sizes ranging from 100 to 930 µm for all sites. There was no indication of biotic influence on sediment stability, although our cores did not display a fluff layer of unconsolidated sediment. Concurrent studies in the delta and shelf region suggest the importance of a nepheloid layer which transports suspended particles to the slope. Continuous cycles of resuspension, deposition, and horizontal advection may intensify with reduction of sea ice in this region. Our measurements coupled with studies of circulation and cross-shelf exchange allow parameterization and modeling of particle dynamics and carbon fluxes under various climate change scenarios.     

Th-derived particulate organic carbon fluxes in the northern Barents Sea with comparison to drifting sediment trap fluxes

Large-volume sampling of ²³⁴Th was conducted to estimate particulate organic carbon (POC) export in conjunction with drifting sediment trap deployments in the northern Barents Sea in July 2003 and May 2005. ²³⁴Th-derived POC fluxes averaged 42.3 ± 39.7 mmol C m^− 2 d^− 1 in 2003 and 47.1 ± 30.6 mmol C m^− 2 d^− 1 in 2005. Sediment trap POC fluxes averaged 13.1 ± 8.2 mmol C m^− 2 d^− 1 in 2003 and 17.3 ± 11.4 mmol C m^− 2 d^− 1 in 2005, but better reflected the transient bloom conditions that were observed at each station within a season. Although ²³⁴Th fluxes agreed within a factor 2 at most stations and depths sampled, sediment trap POC fluxes were lower than large-volume POC flux estimates at almost every station. This may represent an under-collection of POC by the drifting sediment traps or, conversely, an over-collection of POC by the large-volume sampling of ²³⁴Th. It is hypothesized that the offset between the two methods is partly due to the presence of the prymnesiophyte Phaeocystis pouchetii, which potentially causes a large variation in > 53-μm POC/²³⁴Th ratios. Due to the large proportion of dissolved carbon or mucilage released by P. pouchetii, and because it is thought that P. pouchetii does not contribute significantly to the vertical export of biogenic matter in the Barents Sea, the application of large-volume sampling of ²³⁴Th may yield relatively high, and possibly inaccurate POC/²³⁴Th ratios. Hence, POC fluxes derived from ²³⁴Th sampling may be inappropriate and drifting sediment traps might be a more reliable method to measure the vertical export of biogenic matter in regions that have recurrent P. pouchetii blooms, such as the Barents Sea.     

Microbial food web responses to light and nutrients beneath the coastal Arctic Ocean sea ice during the winter–spring transition

We measured the abundance and biomass of phototrophic and heterotrophic microbes in the upper mixed layer of the water column in ice-covered Franklin Bay, Beaufort Sea, Canada, from December 2003 to May 2004, and evaluated the influence of light and nutrients on these communities by way of a shipboard enrichment experiment. Bacterial cell concentrations showed no consistent trends throughout the sampling period, averaging (± SD) 2.4 (0.9) × 10⁸ cells L^− 1; integrated bacterial biomass for the upper mixed layer ranged from 1.33 mg C m^− 3 to 3.60 mg C m^− 3. Small cells numerically dominated the heterotrophic protist community in both winter and spring, but in terms of biomass, protists with a diameter > 10 µm generally dominated the standing stocks. Heterotrophic protist biomass integrated over the upper mixed layer ranged from 1.23 mg C m^− 3 to 6.56 mg C m^− 3. Phytoplankton biomass was low and variable, but persisted during the winter period. The standing stock of pigment-containing protists ranged from a minimum value of 0.38 mg C m^− 3 in winter to a maximal value of 6.09 mg C m^− 3 in spring and the most abundant taxa were Micromonas-like cells. These picoprasinophytes began to increase under the ice in February and their population size was positively correlated with surface irradiance. Despite the continuing presence of sea ice, phytoplankton biomass rose by more than an order of magnitude in the upper mixed layer by May. The shipboard experiment in April showed that this phototrophic increase in the community was not responsive to pulsed nutrient enrichment, with all treatments showing a strong growth response to improved irradiance conditions. Molecular (DGGE) and microscopic analyses indicated that most components of the eukaryotic community responded positively to the light treatment. These results show the persistence of a phototrophic inoculum throughout winter darkness, and the strong seasonal response by arctic microbial food webs to sub-ice irradiance in early spring.     

Turbulent mixing and internal tides in Gaoping (Kaoping) Submarine Canyon, Taiwan

Turbulent overturning on scales greater than 10 m is observed near the bottom and in mid-depth layers within the Gaoping (formerly spelled Kaoping) Submarine Canyon (KPSC) in southern Taiwan. Bursts of strong turbulence coexist with bursts of strong sediment concentrations in mid-depth layers. The turbulence kinetic energy dissipation rate in some turbulence bursts exceeds 10^− 4 W kg^− 1, and the eddy diffusivity exceeds 10^− 1 m² s^− 1. Within the canyon, the depth averaged turbulence kinetic energy dissipation rate is ~ 7 × 10^− 6 W kg^− 1, and the depth averaged eddy diffusivity is ~ 10^− 2 m² s^− 1. These are more than two orders of magnitude greater than typical values in the open ocean, and are much larger than those found in the Monterey Canyon where the strong turbulent mixing has also been. The interaction of tidal currents with the complex topography in Gaoping Submarine Canyon is presumably responsible for the observed turbulent overturning via shear instability and the breaking of internal tides and internal waves at critical frequencies. Strong 1st-mode internal tides exist in KPSC. The depth averaged internal tidal energy near the canyon mouth is ~ 0.17 m² s^− 2. The depth integrated internal tidal energy flux at the mouth of the canyon is ~ 14 kW m^− 1, propagating along the axis of the canyon toward the canyon head. The internal tidal energy flux in the canyon is 3–7 times greater than that found in Monterey Canyon, presumably due to the more than 10 times larger barotropic tide in the canyon. Simple energy budget calculations conclude that internal tides alone may provide energy sufficient to explain the turbulent mixing estimated within the canyon. Further experiments are needed in order to quantify the seasonal and geographical distributions of internal tides in Gaoping Submarine Canyon and their effects on the sediment flux in the canyon.     

Experiments on the survival of six brackish macro-invertebrates from the Baltic Sea after dredged spoil coverage and its implications for the field

Physical disturbance by disposal of dredged materials in estuarine and coastal waters may result in burial of benthic fauna. Survival rates depend on a variety of factors including the type and amount of disposed materials and the lifestyle of the organisms. Laboratory burial experiments using six common macrobenthic invertebrates from a brackish habitat of the western Baltic Sea were performed to test the organisms' escape reaction to dredged material disposal. Experimental lab-results were then extrapolated to a field situation with corresponding bottom topography and covering layer thicknesses at experimental field disposal study sites. Resulted survival rates were then verified by comparison with results of an earlier field study at the same disposal sites.Our experimental design in the lab included the disposal of two types of dredged material (i.e. ‘till’ and ‘sand/till mixture’) and two covering layer depths (i.e. 10–20 cm and 14–40 cm). All three bivalves Arctica islandica (Linnaeus), Macoma balthica (Linnaeus), Mya arenaria (Linnaeus) and the polychaete Nephtys hombergii (Savigny) successfully burrowed to the surface of a 32–41 cm deposited sediment layer of till or sand/till mixture and restored contact with the overlying water. These high escape potentials could partly be explained by the heterogeneous texture of the till and sand/till mixture with ‘voids’. The polychaete Bylgides (Harmothoe) sarsi (Malmgren) successfully burrowed through a 16 cm covering layer whereas the polychaete Lagis koreni (Malmgren) showed almost no escaping reaction. No general differences in escape behaviour after burial were detected between our test species from the brackish habitat and those reported in the literature for the same species in marine environments. However, a size-dependence in mobility of motile polychaetes and M. arenaria was apparent within our study. In comparison to a thick coverage, thin covering layers (i.e. 15–16 cm and 20 cm) increased the chance of the organisms (N. hombergii and M. arenaria) to reach the sediment surface after burial. This was not observed for the other test species. While crawling upward to the new sediment surfaces burrowing velocities of up to 8 cm d^− 1 were observed for the bivalves and up to 20 cm d^− 1 for N. hombergii. Between 17 and 79% of the test organisms showed burrowing activity after experimental burial. The survival rate (defined as the ability to regained contact with the sediment surface) ranged from 0 to 33%, depending on species and on burial depth. The organisms reached the sediment surface by burrowing (polychaetes and bivalves) and/or by extending their siphons to the new sediment surface (bivalves). The extrapolation of laboratory survival rates to the two disposal sites was obtained based on the in situ thicknesses of the dredged spoil layers measured by multi-beam echo sounder. This resulted in total average survival rate estimates for the test species of 45 and 43% for the two disposal sites. The results obtained during the laboratory tests and the following extrapolation to the field were verified by the range of results from a previous field study, using grab sampling shortly before and after a disposal event in June 2001. The effect of dredged material disposal on the tested Baltic Sea benthic macrofauna was assessed by extrapolating the verified laboratory results to the field.     

Analysis of the hydrophysical structure of the Sea of Azov in the period of the bottom anoxia development

The hydrophysical and hydrochemical structure of the Sea of Azov, with developed bottom anoxia, was studied during the RV “Akvanavt” cruise from July 31 to August 03, 2001. The anoxic zone with a thickness from 0.5 to 4 m above the bottom was found in all deep regions of the Sea. Concentrations of hydrochemical parameters were similar to the pronounced anoxic conditions (about 90 mmol m^− 3 of hydrogen sulfide, 17 mmol m^− 3 of ammonia, 6 mmol m^− 3 of phosphate, 7 mmol m^− 3 of total manganese). The hydrophysical structure was characterized by the uniform distribution of temperature in the upper 6–7 m mixed layer (UML). Below this a thin (0.4–0.8 m) thermocline layer was observed, just above the anoxic waters. Formation of this phenomenon was connected with that summer weather conditions. Intensive rains led to increased influx of river waters in June. That resulted in large input of allochtonous organic matter (OM) and inorganic nutrients; the latter were consumed on the additional autochthonous organic matter production. In July the weather was characterized by a significant rise in the daily averaged air temperature and large oscillations of temperature during the day. In this period a wind of constant direction was absent, but wind bursts were observed. The completed analyses showed that the formation of such a structure could be connected with the following factors: (i) positive growth trends of the daily averaged temperature and the daily oscillations of temperature, (ii) presence of wind bursts. The joint action of these factors resulted in the formation of the UML. The amplitude of wind bursts determined the depth of UML, and the value of trend determined the value of the temperature change in the thermocline. An initial presence of bottom halocline (caused by the Black Sea water influx to the bottom of the Sea of Azov) prevented the heating of the bottom layer and therefore led to an increase of vertical gradient of temperature in the thermocline. The spatial distribution of the turbulent exchange coefficient confirmed the existence of a “stagnation” area located above the anoxia zone, which is also, apparently, the reason for its occurrence.     

On the morphological long-term development of dumped material in a low-energetic environment close to the German Baltic coast

The development of the bed bathymetry of an experimental dumping area was followed over three-and-a-half years by means of multibeam echosounder techniques. Two types of material were discharged in the bight of Mecklenburg in the Baltic Sea in approximately 20 m of water depth. One set of the discharges was 2900 m³ of glacial till and the other set was a 2400 m³ mixture of glacial till, sand and minor amounts of cohesive matter. Only approximately 2500 m³ (86%) of the glacial till and 1500 m³ (63%) of the mixed soil materials were deposited on the seabed. This means that already during the dumping process a considerable part of the sediment material drifted away. The glacial till formed crater-like rings of 30 m diameter with peaks up to 1.4 m above seabed, whereas the spatial structure of the mixed soil material was somewhat more diffuse, but with similar magnitudes in the peaks and troughs.The morphological changes were small and their quantification required a high measuring precision in the order of few cm in the vertical. The dominant processes of surface deformation was flattening of peaks and filling of troughs. The speed of this process decreased with horizontal scale: structures of less than 4 m horizontal extension had a trend to disappear within less than five years, whereas structures of larger than 8 m extension showed little change and are estimated to remain detectable for many decades. In contrast to the reworking of the matter inside the dumping structures, no net transport of material out of the dumping area could be detected. Extrapolating the observed morphological changes into the future it is estimated that without significant decrease in internal shear strength of the disposed till the structures will persist for at least 70 years. This can be attributed to the high internal stability of the dumped glacial till and the low hydrodynamic forces present at the seabed in this region.     

Microbial community structure in the marginal ice zone of the Bellingshausen Sea

Phytoplankton, bacteria and microzooplankton were investigated on a transect in the Bellingshausen Sea during the ice melt period in November–December 1992. The transect along the 85°W meridian comprised seven stations that progressed from solid pack-ice (70°S), through melting ice into open water (67°S). The abundance, biomass and taxonomic composition were determined for each component of the microbial community. The phytoplankton was mostly dominated by diatoms, particularly small (<20 μm) species. Diatom abundance ranged from 66 000 cells l⁻¹ under the ice to 410 000 cells l⁻¹ in open water. Phytoplankton biomass varied from <1 to 167 mg C m⁻³, with diatoms comprising 89–95% of the total biomass in open water and autotrophic nanoflagellates comprising 57% under the ice. The standing stocks of autotrophs in the mixed layer ranged from 95 mg C m⁻² under the pack-ice to 9478 mg C m⁻² in open waters. Bacterial abundance in ice-covered and open water stations varied from 1.1 to 5.5×10⁸ cells l⁻¹. Bacterial biomass ranged from 2.4 mg C m⁻³ under pack-ice to an average of 14 mg C m⁻³ in open water. The microzooplankton consisted mainly of aloricate oligotrich ciliates and heterotrophic dinoflagellates and these were most abundant in open waters. Their biomass varied between 0.2 and 54 mg C m⁻³ with a minimum at depth under the ice and maximum in open surface waters. Microheterotrophic standing stocks varied between 396 mg C m⁻² under pack-ice and 3677 mg C m⁻² in the open waters. The standing stocks of the total microbial community increased consistently from 491 mg C m⁻² at the ice station to 13 155 mg C m⁻² in open waters, reflecting the productive response of the community to ice-melt. The composition of the microbial community also shifted markedly from one dominated by heterotrophs (82% of microbial stocks) at the ice station to one dominated by autotrophs (73% of microbial stocks) in the open water. Our estimates suggest that the microbial community comprised >100% of the total particulate organic carbon (POC) under the ice and 62–66% of the measured POC in the open waters.     

Sediment profile imaging (SPI) and micro-electrode technologies in impact assessment studies: Example from two fjords in Southern Chile used for fish farming

Two state-of-the-art techniques were used to assess the impact of organic loading from fish farming in two fjords of Southern Chile, Pillan and Reñihue Fjords. A sediment profile imaging (SPI) camera was deployed and sediment microprofiles (oxygen, H₂S, redox and pH) were measured in undisturbed sediment cores collected using a HAPS corer. Four out of seven stations in Pillan Fjord were found to be severely disturbed: SPI images showed azoic conditions (no apparent Redox Potential Discontinuity layer, no evidence of aerobic life form, presence of an uneaten fish food layer, negative OSI scores). These findings were corroborated by very high oxygen consumption rates (700–1200 mmol m^− 2 day^− 1), H₂S concentrations increasing quickly within the sediment column and redox potential decreasing towards negative values within a few mm down core. Results for Reñihue Fjord were not so straightforward. SPI images indicated that most of the stations (R3 to R7) presented well-mixed conditions (high apparent RPD layers, presence of infauna, burrows, etc.), but oxygen profiles yielded consumption rates of 230 to 490 mmol m^− 2 day^− 1 and organic carbon mineralization of 2.16 to 4.53 g C m^− 2 day^− 1. These latter values were close to the limit of aerobic degradation of organic matter although no visible changes were recorded within the sediment column. In view of our findings, the importance of integrating multidisciplinary methodologies in impact assessment studies was discussed.     

A finite element model for the Venice Lagoon. Development, set up, calibration and validation

The development, calibration and validation of a two-dimensional finite element model for the Venice Lagoon is described. The model uses a staggered grid for the spatial integration of the water levels and velocities. A semi-implicit numerical time stepping scheme is implemented, which guarantees unconditional stability for the gravity wave propagation. Because of the shallow depths in the lagoon, the model deals also with areas where flooding and drying occur.A first calibration of the model has been performed against harmonic constants of 12 tide gauges located in the lagoon. After this calibration, model output shows a good agreement with a set of water level data referring to a period of calm winds and to another data set of water level data measured in 38 stations during a period of strong winds.Meteorological data and river discharges are used to set up a 1-year long simulation that models the salinity and temperature fields. The temperature time evolution is well simulated. Comparison of model output to salinity data is not straightforward, since input data for the main rivers that discharge freshwater into the lagoon is not available for the year of reference. However, yearly averages of observed values of salinity are in a reasonable agreement with results of a climatological simulation.The presented model shows good propagation of the tidal wave and stability characteristics. It is the first step for a comprehensive model of the Venice Lagoon that deals not only with hydrodynamic variables, but also with sediment transport and ecological processes.     

The biogeochemical cycling of methane in Ria de Vigo, NW Spain: Sediment processing and sea–air exchange

Methane (CH₄) concentrations were measured in the water column, in sediment porewaters, and in atmospheric air, in the Ría de Vigo, NW Spain, during both the onset (April 2003) and at the end of (September 2004) seasonal upwelling. In addition, CH₄ concentration and stable isotopic signatures (δ¹³CH₄) were measured in porewaters, and sediment methanogenesis and aerobic oxidation of CH₄ were determined in sediment incubations. Surface water column CH₄ (2 m depth) was in the range 3–180 nmol l^− 1 (110–8500% saturation) and followed a generally landward increase but with localised maxima in both the inner and middle Ría. These maxima were consistent with CH₄ inputs from underlying porewaters in which CH₄ concentrations were up to 3 orders of magnitude higher (maximum 350 μmol l^− 1). Surface water CH₄ concentrations were approximately three times higher in September than in April, consistent with a significant benthic CH₄ flux driven by enhanced sediment methanogenesis following the summer productivity maximum. CH₄ and δ¹³CH₄ in sediment porewaters and in incubated sediment slurries (20 °C) revealed significant sediment CH₄ oxidation, with an apparent isotopic fractionation factor (r_c) of  1.004. Using turbulent diffusion models of air–sea exchange we estimate an annual emission of atmospheric CH₄ from the Ría de Vigo of 18–44 × 10⁶ g (1.1–2.7 × 10⁶ mol). This estimate is approximately 1–2 orders of magnitude lower than a previous estimate based on a bubble transport model.     

Habitat characteristics as determinant of the structure and spatial distribution of epibenthic and demersal communities of Le Danois Bank (Cantabrian Sea, N. Spain)

The purpose of this paper is to detect and describe general trends in the spatial distribution of epibenthic and demersal communities of Le Danois Bank (El Cachucho) in relation to the environmental variables that characterize their habitat by means of multivariate ordination. Data were derived from two multidisciplinary surveys carried out in October 2003 and April 2004 included in the ECOMARG project. The surveys were focused on the study of the physical scenario, including both geological (seabed characterization from bathymetry and backscatter data) and hydrographic features, and the different compartments of the benthic fauna (endobenthic, epibenthic, suprabenthic and demersal communities). For the present study, epibenthos and demersal species were sampled using two different gears, a 3.5 m beam trawl and a Porcupine 39/52 type baca otter trawl respectively. The total species richness combining both samplers ascended to 221, including 71 species of fishes, 65 crustaceans, 35 molluscs, 29 echinoderms, 10 cnidarians and 5 sponges.Multivariate methods were used for the study of the characteristics of communities and habitats. Hierarchical cluster analysis was applied to calculate and visualize similarities between samples in terms of species composition. To assess the amount of variation of faunal densities related to a set of eight environmental variables, a redundancy analysis (RDA) was used. The set of environmental variables used were: depth, near-bottom temperature and salinity, sedimentary typology (dry weight percentages of coarse sands, medium and fine sands, silt and organic matter) and seafloor reflectivity. Using the spatial distribution of the ranges of depth and seafloor reflectivity that characterize the habitats of the faunal assemblages we defined the spatial distribution of the different communities.The multivariate analysis of 18 beam-trawl samples and 15 otter trawl samples showed the existence of 4 main assemblages associated with the more characteristic habitats of the area. The Callogorgia–Chimaera community live mainly in the areas at the top of the Bank (425–550 m depth), where the sediment coverage is lower and there exists a high presence of rocky outcrops. The Gryphus–Galeus community were found in the areas at the top of the Bank covered by medium and fine sand sediments with low organic matter content. The Phormosoma–Trachyrincus community live on the sedimentary terraces that characterize the Bank break (550–800 m) and the Pheronema–Deania community occupy all the deeper (800–1050 m) sedimentary grounds of the inner basin.     

Biochemical composition of marine sediment from the eastern Weddell Sea (Antarctica): High nutritive value in a high benthic-biomass environment

Within the SCAR's international EASIZ programme, as part of the benthic–pelagic coupling experiment, grain size and organic matter contents in marine surface sediment were measured. Samples were taken during the austral autumn of 2000 from 3 regions in the eastern Weddell Sea: Kapp Norvegia, Four Seasons Bank, and Austasen.In general, sediments were fine sand with a grain size fraction < 200 μm representing more than 40% of the total weight. The sediments from Four Seasons Bank (64 to 107 m depth) were coarser than those from Austasen and Kapp Norvegia (209 to 480 m depth), presumably due to winnowing of fine sediment at shallow depths. Organic carbon (OC) content ranged from 0.25% to 1.2% and constituted 10% to 97% of the total carbon. The samples from Kapp Norvegia presented the highest OC values. Overall, protein (PRT), lipid (LPD), and carbohydrate (CHO) contents were similar to those in sediment from cold regions (e.g., the North Atlantic and the Ross Sea) but higher than those in sediment from other Antarctic and more septentrional regions (e.g., the Ross Sea and the Mediterranean). The difference within the Antarctic is explained through the local conditions in Terra Nova Bay and Kapp Norvegia. In the Antarctic, PRT and LPD carbon were the main contributors to the biopolymeric carbon (BPC). In the eastern Weddell Sea shelf, the BPC accounted for more than 90% of the OC in most of the samples. More than 82% of the total PRT, LPD, and CHO were present in the fraction < 200 μm. This work remarks the existence of sediments with a high nutritional value persistent several weeks after the spring–summer pulse of fresh organic matter. It is also highlighted the high potential availability of these sediments (due to its grain size) for the benthic communities inhabiting this high-latitude continental shelf.     

Benthic megafauna communities under the influence of the South Atlantic Central Water intrusion onto the Brazilian SE shelf: A comparison between an upwelling and a non-upwelling ecosystem

The structure and dynamics of the benthic invertebrate megafauna of the Southeastern Brazilian shelf were studied over a 2-year period. Two regions presenting different oceanographic conditions, Ubatuba-SP and Cabo Frio-RJ were compared in terms of biomass, density of organisms and species richness. Two to three 30-min tows were undertaken at each of the stations, located at 40 and 100 m isobath, in a normal transect offshore of both regions. Faunal distributional patterns correlated with water mass dynamics, depth and sediment parameters. In the Cabo Frio region, subjected to a Ekman-driven seasonal coastal upwelling, the impact of the South Atlantic Central Water (SACW) on the inner shelf leads to a change in the benthic communities, with a high dominance of top carnivores such as the crab Portunus spinicarpus and the sea-star Astropecten brasiliensis, which accounted for the larger part of the total biomass. Distinct species associations were found in each of the two regions and the total biomass at Cabo Frio inner shelf was almost twice that of Ubatuba during the 2002 summer, when a marked upwelling was verified. The relationship between megabenthic biomass and input of organic matter to the sea floor during upwelling events is discussed.