ANALYSIS ON GENETIC POLYMORPHISM OF 6 STR LOCI ON CHROMOSOME 12 IN CHINESE HAN POPULATION

Shorttandemrepeats(STRs)arearichsource ofhighlypolymorphicmarkersinthehumange nome,arerelativelysmallinsize,andcanbestud iedwiththerelativeexpediently.ThustheSTR polymorphismsarehighlyusefultoolsforlinkagea nalysisofdisease relatedgenesandconstructionthe …     

中国新疆锡伯族3个STR位点的遗传多态性研究

目的　通过对新疆伊犁地区锡伯族人群D1 6S5 3 9,D7S82 0 ,D1 3S3 1 7三个STR位点的基因型及等位片段频率分布的研究和数据统计分析 ,初步探讨其在遗传学研究及法医学应用中的意义。方法　随机抽取 1 1 0名新疆锡伯族无关个体静脉血 ,用柠檬酸钠抗凝冻存 ,采用全血基因组DNA纯化系统提取DNA ,并用复合PCR技术 ,同时扩增上述三个STR位点 ,聚丙烯酰胺凝胶垂直电泳分型 ,银染显色。结果　上述三个STR位点均符合Hardy Weinberg平衡定律。通过种族间比较 ,新疆锡伯族除D1 6S5 3 9位点与北京汉族人无差异 ,D7S82 0位点与西班牙人无差异外 ,其余位点与高加索人、美国黑人、西班牙人和北京汉族人均有明显差异。新疆锡伯族上述三位点累积排除概率为 0 90 76 ,多态性信息总量为 0 9876。D1 6S5 3 9、D7S82 0和D1 3S3 1 7三个位点杂合度分别为 0 90 2 8、0 8875和 0 92 86 ,所有位点杂合度均高于其他种族。结论　上述三个STR位点的综合检验可用于群体遗传学研究和法医学应用。     

200例国人DNA纹印基因频率分布—D2S44及D17S79位点的DNA多态性

DNA 纹印具有高度多态性,是解决个体识别及亲子鉴定等问题的最新技术.本文利用此项技术,研究了200名国人的D2S44及D17S79二位点的等位基因频率分布.结果发现D2S44位点片段带大小变异数为29,其中可检出两个等位基因团.一在7.7和9.1kb 之间,最常见于8.0kb,另一在9.8和14.1kb 之间,最大频率在11.1kb,占17.25%。D17S79位点片段带大小变异数为27,等位基因团在约4kb大小的范围内,最大频率在3.4kb,占29.55%.与国外报道结果相比,显示种族差异.     

西安汉族人群HLA-DQA1基因座遗传多态性研究

目的　了解西安汉族群体HLA DQA1基因座的基因及基因型分布 ,获得西安汉族群体HLA DQA1群体遗传学数据。方法　采用PERKIN ELMER公司生产的AmpliTypePM试剂盒 ,PCR扩增HLA DQA1基因座 ,与 11个寡核苷酸探针杂交 ,对西安地区汉族 10 2名无关个体HLA DQA1基因座进行基因频率调查。结果　检出 7种等位基因、2 8种基因型 ,经 χ2 检验基因型的观察值与期望值符合Hardy Weinberg平衡定律 (P >0 .5 ) ,其杂合度 (H)、个体识别率 (DP)、非父排除率 (EPP)和多态信息量 (PIC)分别为 0 .8317、0 .9393、0 .786 6和0 .82 5 0。结论　所得到的群体遗传学数据为遗传学、法医学个体识别和亲权鉴定提供依据     

陕西汉中地区人群15个STR基因座的多态性分析

目的　调查 15个STR基因座 (D3S135 8、vWA、FGA、TH0 1、TPOX、CSF1PO、D5S818、D13S317、D7S82 0、D16S5 39、D8S1179、D2 1S11、D18S5 1、D2S1338、D19S4 33)在陕西省汉中地区汉族人群中的多态性分布 ,为群体学研究、法医学个体识别和亲权鉴定提供基础数据。方法　应用AmpF/STRIdentifiler荧光标记复合扩增试剂盒 ,结合ABI310 0Avant遗传分析仪 ,对汉中地区 10 3名汉族无关个体的静脉血进行扩增和电泳检测 ,并利用Genescan和Genotype软件进行自动分型。结果　 15个STR基因座在汉中地区汉族人群中的等位基因频率分布在 0 .0 0 4 9～ 0 .5 0 4 9,基因型频率分布在 0 .0 0 97～ 0 .32 0 4 ,累计耦合概率为 5 .5× 10 -17,累计非父排除率为 0 .999999999。结论　我们所应用的 15个STR基因座在陕西汉中地区汉族人群中具有较高的多态性 ,适合于该地区的群体学研究、法医学实践     

RESEARCH OF GENETIC POLYMORPHISM OF 5-HTT IN CHILDHOOD AUTISM

Objective To reveal the relationship between the 5-HTTLPR and the Chinese Han nationality children with CA, compared the distribution of the 5-HTTLPR between the Han Chinese children with CA and healthy Han Chinese children , and analyzed the association between the 5-HTTLPR and clinical symptoms of the Han Chinese children with CA. Methods Genomic DNAs of fifty subjects including 25 autistic children and 25 controls were extracted from blood samples. PCR amplification using Oligonucleotide primers flanking 5-HTTLPR was performed. Results① Three kinds of alleles including the S （short） allele, the L （long） allele and the VL allele were found , and the 5-HTTLPR genotypes shown were S/S, L/L, S/L and L/VL. ②Allele frequencies did not differ significantly in patient groups in comparison with the control sample. No significant difference was identified between the observed 5-HTTLPR genotype distribution of the patient groups and control group. ③The distribution of homozygons and heterozygous subjects between the two groups differed significantly. ④ The genotypes of the 5-HTTLPR polymorphism correlated significantly with the Body Movement Factor. ⑤ The allele frequency of healthy Han Chinese population and that of healthy Japanese population were similar. The frequency of S allele in not only autistic subjects but also healthy children in this study was considerably more than that in Caucasians and the frequency of L allele in our subjects decreased correspondingly. Conclusion ① A significant difference in the allele frequency between the Han Chinese and Caucasian populations was found. ② The genotypes of the 5-HTTLPR polymorphism correlated significantly with the Body Movement Factor of the patients. ③ The homozygote and the L allele were positively relevant to CA and they might be the risk factors of CA. The heterozygote and the S allele were negatively relevant to CA and they might be the protective factors of CA.     

中国新疆哈萨克族人群CSF1PO、TH01和TPOX三个STR位点的遗传多态性

目的　获得CSF1P0、TPOX和TH0 1三个短串联重复序列 (shorttandemrepeat ,STR)在新疆哈萨克族人群中等位基因频率、基因型频率及相关法医学数据。方法　应用PCR技术、4 0 g·L-1(4% )变性聚丙烯酰胺凝胶电泳及银染技术对上述三个STR位点分型。结果　新疆哈萨克族人群CSF1P0位点有 8个等位片段 ,TPOX位点有 8个等位片段 ,TH0 1位点有 7个等位片段 ;3个位点的基因型分布均符合Hardy Weinberg平衡 ;各位点杂合度分别为 0 .875 3、0 .8777、0 .932 1,多态信息量分别为 0 .74 0 1、0 .75 6 8、0 .75 0 9。结论　得到的上述三个位点的基因频率数据可为新疆哈萨克人群遗传学研究和法医学应用提供依据     

THE STUDY OF POPULATION GENETIC RELATION AMONG TEN ETHNIC GROUPS IN NORTHWEST CHINA

Objective To investigate the genetic relation among ten ethnic groups in northwest China. Methods Allele frequencies of six STR(short tandem repeat) loci in D13S1358, VWA, FGA, D5S818, D13S317, and D7S820 were collected from Lasa Tibetan, Changdu Tibetan, Xi‘an Han, Gansu Dongxlang, Gansu Yugu, Xinjiang Uygur,Ozbak, Kirgiz, Sibe, Ningxla Hui by the results of State Key laboratory, Forensic Science Department, school of medical, Xi‘an Jiaotong University and internet biological information data bank, and compared with that of the Mongolian, Zhuang in China, and White and Negro in USA. The polymorphism index (H, DP, PPE, PIC) and genetic distance, then the phylogenetic tree of all population were reported. Results The resulting tree topology exhibited strong geographic and racial partitioning consistent with that obtained with HLA and classical genetic polymorphisms.Conclusion The results suggest that forensic STR loci may be particularly powerful tools and provide the necessary fine resolution for the reconstruction of recent human evolutionary history.     

西安汉族、西藏珞巴族DXS6799和HPRTB位点的遗传多态性

目的调查X染色体STR位点DXS6799、HPRTB在西安汉族、西藏珞巴族的遗传多态性。方法应用PCR和聚丙烯酰胺凝胶电泳及银染技术进行基因分型。结果西安汉族DXS6799检出6个等位基因,基因频率在0.0160～0.4840之间,女性和男性的个体识别率分别为0.8516、0.6157;HPRTB位点检出8个等位基因,等位基因频率在0.011～0.290之间,女性和男性的个体识别率分别为0.7974、0.7039。西藏珞巴族DXS6799检出5个等位基因,基因频率为0.0222～0.6074之间,女性和男性的个体识别率分别为0.7684、0.5805;HPRTB位点检出5个等位基因,等位基因频率在0.0420～0.3866之间,女性和男性的个体识别率分别为0.8661、0.7029。西安汉族、西藏珞巴族女性的基因型分布均符合Hardyweinberg平衡。结论DXS6799和HPRTB有较高的个体识别率和非父排除率,在个体识别和亲权鉴定中有应用价值。     

内蒙古达斡尔族群体9个X-STR位点的遗传多态性及法医学应用价值评估

目的研究内蒙古达斡尔族群体9个X-STR位点(DXS6789、DXS101、DXS8378、DXS7132、DXS7133、DXS7423、DXS6804、DXS6799、HPRTB)的多态性分布及法医学应用价值。方法抽取内蒙古达斡尔族87名健康无关个体静脉血,提取DNA,经PCR扩增、变性聚丙烯酰胺凝胶电泳及银染显色技术进行等位基因分型;采用SPSS13.0软件计算各位点基因型频率和等位基因频率,并检验等位基因分布差异有无统计学意义;Genepop软件进行Hardy-Weinberg平衡检验;Fstat软件计算基因多态性、固定指数并检验固定指数偏离平衡的程度;Powerstats软件计算各种法医学应用指标。结果获得内蒙古达斡尔族群体9个X-STR位点等位基因频率分布的数据;进一步检验获得9个X-STR位点中DXS7133位点的多态性和分化程度较低;DXS7423和DXS7132位点在不同民族中基因分布差异无统计学意义。结论9个X-STR位点中,DXS6789、DXS101、DXS8378、DXS7132、DXS7423、DXS6804、DXS6799、HPRTB 8个位点有较高的遗传多态性和个体识别率,在个体识别和女孩的亲权鉴定中有较高应用价值,对疾病相关研究有实际意义。     

新疆哈萨克族群体三个STR位点遗传多态性

目的　了解新疆哈萨克族人群D1 6S5 39,D7S82 0 ,D1 3S31 7三个STR位点的遗传多态性 ,建立该民族群体遗传学数据库。方法　运用复合PCR扩增 ,6 %变性聚丙烯酰胺凝胶电泳结合银染技术对 1 0 2位无关个体及 8个家系 42人的哈萨克族人群进行调查 ,并与其他种族或人群进行比较。结果　三个位点分别检测出 8、7、8个等位片段 ,多态性分布符合Hardy Weinberg平衡定律。期望杂合度为 0 .9439、0 .935 6、0 .930 4。三个位点的累积PIC =0 .990 5、DP =0 .9998、PE =0 .95 72。此外 ,在与其他四个人群比较中发现除与北京汉族在D7S82 0位点上无统计学意义 (P >0 .0 5 ) ,其余均可见显著性差异 (P <0 .0 5 )。同时 ,在家系调查中无一突变发现且均按孟德尔遗传规律传递。结论　三个STR位点的联合分析在法医学应用及群体遗传学中具有较高的价值。     

REPORT OF HLA DISTRIBUTION IN 2315 VOLUNTEER DONORS OF CHINESE BONE MARROW BANK FROM NORTHWEST CHINA

HumanLeukocyteAntigen(HLA)system, knownashumanmajorhistocompatibilitycomplex (MHC),playsakeyroleinantigenprocessing,im muneregulationandotheraspects.HLAisalsobeen calledastransplantingantigenasaccuratetypingof HLAonbothpatientanddonorcanincreasedramat i…     

甘肃裕固族9个STR基因座遗传多态性研究

目的　研究中国甘肃裕固族STR遗传结构。方法　选择 9个STR基因座 (D3S135 8,VWA ,FGA ,TH0 1,TPOX ,CSF1PO ,D5S818,D13S317,D7S82 0 ) ,采用STR复合扩增及荧光标记STR基因扫描技术 ,同时检测 12 0个裕固族健康无关个体血液样本。结果　 9个STR基因位点共检出 6 5个等位基因 ,基因频率分布在 0 .0 0 5 7～0 .5 795 ;基因型共有 178种 ,频率分布在 0 .0 114～ 0 .30 6 8之间 ;9个STR位点基因型分布均符合Hardy Weinberg平衡定律 (P >0 .0 5 ) ;9个STR位点多态信息量 (PIC)均大于 0 .6 0 5 4 ,杂合度 (H)均大于 0 .6 15 8,个体识别力 (DP)均大于 0 .82 2 6 ,非父排除率 (EPP)均大于 0 .5 0 17。结论　获得了中国甘肃裕固族 9个STR基因座的遗传多态性数据 ,丰富了中华民族基因数据库 ,在人类群体遗传学及法医学研究领域有重要应用价值。     

5-羟色胺转运体基因多态性和抑郁症的发病、性别、严重程度及自杀行为的相关性

目的探讨中国汉族人群5-羟色胺转运体启动区(5-HTTLPR)基因多态性和抑郁症的发病、性别、严重程度及自杀是否相关。方法应用聚合酶链式反应(PCR)扩增技术测定150例抑郁症患者和150例正常对照者的5-HT-TLPR基因型和等位基因,分别验证各种基因型与中、重度抑郁症发病、性别及自杀行为的相关性。结果病例组SS、LS基因型及S等位基因频率均高于对照组(26.0% vs.20.0%;52.7% vs.46.0%;52.3% vs.43.0%;P均<0.05);两组性别分层比较,女性S等位基因频率高于对照组(55.3% vs.43.6%,P<0.05);病例组严重程度分层比较差异无统计学意义(P>0.05);病例组有无自杀行为分层比较,有自杀行为患者SS基因型频率(37.3% vs.20.2%)及S等位基因频率(61.8% vs.47.5%)均高于无自杀行为患者(P<0.05);抑郁自杀组性别分层比较未显示显著性差异(P>0.05);抑郁自杀组病情程度分层比较,重度抑郁自杀者SS基因型频率(42.5% vs.18.2%)及S等位基因频率(68.7% vs.36.4%)均高于中度抑郁自杀者(P<0.05)。结论在中国汉族人群中,5-HTTLPR多态性和抑郁症相关。S等位基因可能是抑郁症的易感基因,特别是女性,SS型可能是抑郁症易感基因型;S等位基因可能是抑郁症患者自杀的危险基因,SS基因型人群可能是抑郁症患者自杀的危险人群,特别是携带S等位基因的重度抑郁症患者更易自杀。     

回族X染色体STR位点的遗传多态性研究

目的研究宁夏回族群体X染色体上的10个短串联重复序列(DXS101,DXS6789,DXS6799,DXS6804,DXS7130,DXS7132,DXS7133,DXS7423,HPRTB,DXS8378)的基因多态性。方法随机抽取100名宁夏回族无关个体(男性40名,女性58名)的静脉血,提取DNA,PCR扩增,变性聚丙烯酰胺凝胶电泳,银染检测结果。结果DXS101、DXS6789、DXS6799、DXS6804、DXS7130、DXS7132、DXS7133、DXS7423、HPRTB、DXS8378分别检出9、8、4、6、6、6、4、4、5和5十种等位基因,检出17、22、7、14、14、15、6、7、12和8十种基因型;10个位点等位基因频率分别分布在0.0087-0.3130、0.0087-0.2696、0.0348-0.5826、0.0087-0.3044、0.0261-0.4348、0.0261-0.3217、0.0261-0.6783、0.0087-0.4870、0.0261-0.4783和0.0087-0.4870之间;此10个位点女性的基因型频率分布均符合Hardy-Weinberg平衡。多态信息量除DXS7133和DXS7423外均大于0.50;女性个体识别力从0.89(DXS7133,DXS7423)至0.99(DXS101,DXS6789,DXS7132)。结论此10个X染色体STR位点有较高的个体识别率,在个体识别和女孩亲权鉴定中有较高应用价值,对疾病相关研究有重要意义。     

中国撒拉族线粒体DNA序列遗传多态性研究

目的　以无关个体为对象 ,研究撒拉族人群线粒体DNA(mtDNA)序列遗传多态性。方法　应用PCR扩增产物直接测序法 ,对 10 0名撒拉族无关个体线粒体DNAD 环区高变区Ⅰ (HVSⅠ )进行测序分析。结果　在mtDNAHVSⅠ 16 0 91～ 16 4 18之间与Anderson相应序列比较共发现有 83处突变 ,构成 75种单倍型。点突变的主要形式为碱基替代 ,其中转换 83.5 4 % ,颠换 12 .6 6 % ,碱基插入 1.9% ,缺失 1.7%。撒拉族线粒体DNAHVSⅠ基因差异度为 0 .9912 ,偶合概率为 0 .0 189。结论　撒拉族与其他群体比较有其独特的线粒体DNA序列遗传特点 ,与亚洲其他人种及高加索人有明显差异。线粒体DNA序列多态性在群体遗传学调查及法医学个体识别方面有广泛的应用前景。     

A novel mutation-L539fs/47 of hERG in a Chinese long QT syndrome family

Objective To identify the mutation of human ether-a-go-go-related gene (hERG) and analyze the clinical characteristics of a Chinese family with long ST syndrome (LQTS). Methods The electrocardiogram and DNA samples were obtained from a Chinese LQTS family of 26 members. Genotype was performed with polymorphic short tandem repeat (STR) markers at the known LQT1, LQT2, and LQT3 loci. SSCP analysis was used to find aberrant conformers. hERG mutation was confirmed by cloning and sequencing. Results Three gene carriers were linked to chromosome 7q35-36, where the potassium channel gene hERG was encoded. A 19-base pair deletion was identified. The mutation was located at nucleotide position 1 619-1 637 between transmembrane domains S4 and S5. Furthermore, A1692G polymorphism was found both in the normal control and patients. Conclusion A novel 19 bp deletion mutation of hERG is identified in a Chinese family. All gene carriers are demonstrated to be typical LQT2 ECG phenotype.     

MUTATION OF THE ENDOTHELIN-B RECEPTOR AND THE ENDOTHELIN-3 GENE IN CHINESE SPORADIC CASES OF HIRSCHSPRUNGS DISEASE

Objective To investigate the mutation of endothelin receptor B (EDNRB) gene and endothelin-3 (EDN-3) gene in sporadic Hirschsprung's disease (HD) in Chinese population. Methods Genomic DNA was extracted from bowel tissues of 34 unrelated HD patients which were removed by surgery. Exon 3, 4, 6 of EDNRB gene and Exon 1, 2 of EDN-3 gene were amplified by polymerase chain reaction (PCR) and analyzed by single strand conformation polymorphism (SSCP).Results EDNRB mutations were detected in 2 of the 13 short-segment HDs. One mutant was in the exon 3; the other one was in the exon 6. EDN-3 mutation was detected in 1 of the 13 short-segment HDs and in the exon 2. Both EDNRB mutation and EDN-3 mutation were detected in one short-segment HD. No mutations were detected in the ordinary or long-segment HD. Conclusion The mutations of EDNRB gene and EDN-3 gene are found in the short-segment HD of sporadic Hirschsprung's disease in Chinese population, which suggests that the EDNRB gene and EDN-3 gene play important roles in the pathogenesis of HD. the mutations of EDNRB and EDN-3 lead to the maldevelopment of the enteric nervous system.     

中国西北地区汉族人群5-羟色胺2A受体启动区多态性与心境障碍发病、性别、症状、自杀的相关性

目的探讨中国西北地区汉族人群5-羟色胺2A受体(-1438A/G)基因多态性与心境障碍的发病、性别、亚型以及自杀相关是否关联。方法应用聚合酶链反应(PCR)扩增技术测定160例患者(包括单相抑郁症和双相障碍-抑郁相)和160例正常对照的5-HTR2A的基因型和等位基因,分别验证各种基因型与心境障碍的性别、亚型、自杀的相关性。结果病例组的A/G、G/G基因型和G等位基因频数均高于正常对照组(47.5%vs.40.6%;38.7%vs.34.4%;62.5%vs.54.7%;均P<0.05),两组性别分层比较,女性组与男性病例组相比差异无统计学意义(P>0.05)。单相抑郁症与双相障碍-抑郁相两组间进行比较差异无统计学意义(P>0.05)。病例组有无自杀相关分层比较差异无统计学意义(P>0.05)。自杀相关性别分层比较差异无统计学意义(P>0.05)。结论中国西北地区汉族人群5-HTR2A(-1438A/G)基因多态性与心境障碍的发病相关,主要是与单相抑郁症相关;A/G、G/G基因型可能是心境障碍的易感基因型,G等位基因可能是心境障碍的易感基因。     

肝硬化组织微卫星改变的临床研究

目的　研究微卫星改变 (microsatellitealteration ,MA)在肝硬化组织的发生情况及其与病毒性肝炎的关系。方法　运用聚合酶链式反应 -简单重复序列多态性方法 (PCR SSLP)对 30例肝硬化组织石蜡标本的微卫星不稳定性 (microsatelliteinstability ,MSI)和等位基因杂合性丢失 (lossofheterozygosity ,LOH)进行研究。 结果　 30例肝硬化组织中有 17例出现了MA(5 6 .7% ) ,其中至少有一个位点发生的MSI有 4例 (13.3% ) ,而有 15例至少有一个位点出现了LOH(5 0 % ) ,MA的发生与HBV感染及是否合并HCV感染无显著相关。结论　肝硬化作为肝癌的早期表现就已经存在有微卫星改变